Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n15
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    33   0.19 
AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine re...    30   1.8  
AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   9.5  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = -2

Query: 583 KDIFTNKFDYKIKRRLNHLKRLFANLPAESYNS-----CVNDLTDMYLYKEQNETITNFV 419
           KDI   + D +  R    +K+LFA LP   Y S     C N+    Y Y  + E IT   
Sbjct: 399 KDIKDIEDDLQRMRNKPEIKKLFAELPKIRYYSDLVLKCYNEKFYDYFYSGRYEKITCPG 458

Query: 418 KKILDI-SGPDLGCRKLMRIYLNTDTFS 338
            +  D    PD+ C ++   ++  +T S
Sbjct: 459 PQYCDFKQHPDITCMRVNATHIERETLS 486


>AF125954-3|AAD14706.3|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 71 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 326 RLFNSLRKLSTQKFV*PKLEAVYVMYFFVILIKQHNFL 213
           RL +S+R+LSTQKF+       +V+YFF  ++   +FL
Sbjct: 115 RLMSSVRRLSTQKFI----GNCFVVYFFSAVVLIFSFL 148


>AC006769-4|AAF60584.1|  323|Caenorhabditis elegans Hypothetical
           protein Y45G12C.9 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 326 RLFNSLRKLSTQKFV*PKLEAVYVMYFFVILIKQHNFL 213
           RL +S+R+LSTQKF+       +V+YFF  ++   +FL
Sbjct: 115 RLMSSVRRLSTQKFI----GNCFVVYFFSAVVLIFSFL 148


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 272 LEAVYVMYFFVILIKQHNFLTIHLFKFKNK*NS**LSTRKIINRR 138
           L  +++   F+I+ +Q + + + L +F  K NS  +  RK IN+R
Sbjct: 113 LHFLFISCHFIIIFEQTSRIDLELMRFLKKVNSARIQLRKKINQR 157


>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 538 LNHLKRLFANLPAESYNSCVNDLTDMYLYKEQNETIT 428
           L  + RLF  LPAE  N+ V+D+T   +   Q+ + T
Sbjct: 739 LKMVTRLFEELPAEELNNIVDDITPTIIKAYQSTSST 775


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 525  SACLPTCRRNRTIRVSMISPTCIC 454
            S C  TC RN   R+   SPT  C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 525  SACLPTCRRNRTIRVSMISPTCIC 454
            S C  TC RN   R+   SPT  C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,729
Number of Sequences: 27780
Number of extensions: 374261
Number of successful extensions: 1067
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)