Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n13
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 236 1e-62
02_05_0416 + 28791512-28792012 232 1e-61
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 2.3
03_06_0776 - 36176390-36177589 29 4.0
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 28 6.9
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 6.9
07_03_0574 - 19629875-19631032 27 9.2
07_03_0313 + 16620817-16621515 27 9.2
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 27 9.2
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 9.2
>04_04_1026 + 30214437-30214937
Length = 166
Score = 236 bits (577), Expect = 1e-62
Identities = 112/157 (71%), Positives = 137/157 (87%), Gaps = 1/157 (0%)
Frame = -2
Query: 479 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 303
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 302 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 123
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA+IMRNR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 122 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDIN 12
SMA+ ++G+VKEILGT SVGCTV+G+ P DL +I+
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEIS 157
>02_05_0416 + 28791512-28792012
Length = 166
Score = 232 bits (568), Expect = 1e-61
Identities = 110/157 (70%), Positives = 136/157 (86%), Gaps = 1/157 (0%)
Frame = -2
Query: 479 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 303
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 302 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 123
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA++MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 122 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDIN 12
SMA+ ++G+VKEILGT SVGCTV+G+ P DL +I+
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEIS 157
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 323 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 195
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 197 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 108
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 192 KYQTQRQHLP*RCNRHCEDHEKQINGPVPFWLSKRDSW 79
K+ + LP RCN+ C + + P PF S+ W
Sbjct: 145 KWIRSHRDLPLRCNQWCNVVRWEFSNPTPFIRSREFLW 182
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 482 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 354
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 145 MPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 273
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 316 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 453
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 18 VINKIMWRPALHSTSN*LCCAKNLFY*ARKVPGH*SVSHDLRNADYIFKGDVAVVFDIFL 197
++N I++RPA+ S + +C A +F A + L+ + YIF G VA+V I +
Sbjct: 422 LVNPILYRPAIRSYALSVCTAVGMF--ALMCAYAAGSTQHLKTSIYIF-GLVALVLFIMI 478
Query: 198 LFTV 209
L +
Sbjct: 479 LVLI 482
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 440 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 339
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,217
Number of Sequences: 37544
Number of extensions: 396407
Number of successful extensions: 1076
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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