Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n12
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 242 6e-64
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 242 6e-64
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 242 6e-64
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 242 6e-64
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 242 6e-64
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 242 6e-64
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 190 4e-48
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 155 7e-38
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 92 1e-18
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 242 bits (592), Expect = 6e-64
Identities = 114/175 (65%), Positives = 133/175 (76%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 242 bits (592), Expect = 6e-64
Identities = 114/175 (65%), Positives = 133/175 (76%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 242 bits (592), Expect = 6e-64
Identities = 114/175 (65%), Positives = 133/175 (76%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 242 bits (592), Expect = 6e-64
Identities = 114/175 (65%), Positives = 133/175 (76%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 242 bits (592), Expect = 6e-64
Identities = 114/175 (65%), Positives = 133/175 (76%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 242 bits (592), Expect = 6e-64
Identities = 114/175 (65%), Positives = 133/175 (76%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
IV KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
AHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 175
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 190 bits (462), Expect = 4e-48
Identities = 89/135 (65%), Positives = 104/135 (77%)
Frame = -3
Query: 527 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 348
MKA G LREY+V+GR+LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 347 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 168
V KNFGIWLR +SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 TVYCGQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 167 AHSIQIIKVEVIKAA 123
AHSIQI+ VE I A+
Sbjct: 121 AHSIQIMMVEEIAAS 135
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 155 bits (377), Expect = 7e-38
Identities = 70/99 (70%), Positives = 79/99 (79%)
Frame = -3
Query: 299 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAA 120
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQI+KVE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 119 CRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 3
CRRP VKQFH+S I+FPLP RV + F KRP+T+
Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF 139
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 91.9 bits (218), Expect = 1e-18
Identities = 43/65 (66%), Positives = 50/65 (76%)
Frame = -3
Query: 197 RDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 18
RDMGARHRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F K
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60
Query: 17 RPSTY 3
RP+T+
Sbjct: 61 RPNTF 65
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,384,666
Number of Sequences: 237096
Number of extensions: 1728374
Number of successful extensions: 3969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3969
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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