Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n09
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.62 
SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.62 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.9  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = -2

Query: 814  MNNVNPNKFSTKLNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLP 635
            ++ V P+ F        ++SNV   + ++NV  L   +     ++T   T   E+T +  
Sbjct: 1084 LSEVFPSLFHAIQATLEKVSNVNGKLNSENVAALRYADDTMSFLVTLQTTYSFELTLNY- 1142

Query: 634  DLTLMLDKLAEQLLEAINTM--QQTQRNELNNTNSILTNLASS 512
            D + +L K+    L  ++T+  +Q  R+ L+N    L   +SS
Sbjct: 1143 DFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSSSS 1185


>SPBC1A4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = -2

Query: 799 PNKFST---KLNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLL---SEITDSL 638
           P+KF +   KLNQ L  SN  + +   +  LL+  +   +  L  LN  +   SE+   L
Sbjct: 12  PSKFKSPIDKLNQLLPESNDPSILYETSQHLLSEFDKTLNDSLRVLNQQINQVSEVLPRL 71

Query: 637 PDLTLMLDKLAEQLLEAINTM 575
           P +   LD+ +++L E+   M
Sbjct: 72  PTMISALDRESKRLFESCEKM 92


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 266 ERGVTKPPKKSEKLQQYKKAIAAEQTLRTTAD 171
           ERG T  PK   K+   K  I A +  +TTA+
Sbjct: 17  ERGFTNSPKTHPKMSSLKSFIKAVRASKTTAE 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,891
Number of Sequences: 5004
Number of extensions: 58237
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)