Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n09
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    31   0.86 
11_06_0598 - 25391923-25393197                                         30   2.0  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    30   2.0  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    30   2.6  
05_05_0207 + 23272777-23272977,23273831-23275330                       29   3.5  
04_03_0070 + 10677677-10679989                                         28   8.0  

>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 86  HFLILQPHSLIFPTLEKRHSPRGSAKKKHLLWCAAF 193
           HFL   P S  F  L  +H P+    + HLL C AF
Sbjct: 32  HFLHRSPPSPCFLLLRTQHKPKPPQPQLHLLLCTAF 67


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -1

Query: 278 MTLRERGVTKPPKKSEKLQQYKKAIAAEQT 189
           ++LR +GVT+ PKK EKL QY + +   QT
Sbjct: 95  LSLRNKGVTQLPKKIEKL-QYLETLDIRQT 123


>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 576  IVLMASNNCSANLSNMSVKSGNESVISESNVFN 674
            +V + SN CS    NMS+KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 733 NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNE 554
           N+ + +L   E   D+I TRLN  ++ + D L  +   +D   +Q L  +  +  T R E
Sbjct: 206 NEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265


>05_05_0207 + 23272777-23272977,23273831-23275330
          Length = 566

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
 Frame = +3

Query: 513 LDAKLVKIELVLFNSLRCVCCIV--LMASNNCSANLSNMSVKSGNESVISESNVFNLVKI 686
           ++ + VK+E+ LF   +    ++  L A+   + NL     K+ +ES  S     +  K+
Sbjct: 74  VEEQTVKLEMELFVKEKETFKVLKELQATKQVADNLKLQLEKAASESAASARGHSDAGKV 133

Query: 687 TSLAVSNAARSCTF*LRTPVITLDNSKN*LSLVENLFGLTLFINMXVLMT 836
             L   +  R C++    PV +   +++ L+ +  L     F+NM  +MT
Sbjct: 134 YPLP--DTERKCSYHTGQPVESAKGNQSALTTLIKLNQAKAFLNMDTVMT 181


>04_03_0070 + 10677677-10679989
          Length = 770

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 104 PHSLIFPTLEKRHSPRGSAKKKHLLWCAAFA 196
           P S I P+ ++RHS  G  +K+H L  AA+A
Sbjct: 133 PISSIPPSSQRRHSTGGGGRKRHAL-AAAYA 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,832
Number of Sequences: 37544
Number of extensions: 379788
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)