Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n08
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical pr... 33 0.29
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 32 0.38
Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 31 1.2
Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z92804-5|CAD89722.2| 320|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 28 6.3
Z19154-8|CAE17741.1| 335|Caenorhabditis elegans Hypothetical pr... 28 6.3
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 28 6.3
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 28 6.3
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 28 6.3
AF031841-1|AAC13677.1| 601|Caenorhabditis elegans GLY7 protein. 28 6.3
AC006774-7|AAF60620.1| 601|Caenorhabditis elegans Glycosylation... 28 6.3
>U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical
protein T14B4.3 protein.
Length = 296
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 275 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 448
+V F +FG VG QA F+ A+++ G F+Y+ H F F D
Sbjct: 38 SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 32.3 bits (70), Expect = 0.38
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = -1
Query: 760 LTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMY-IAEKPLSIDDI 584
LT SPS ++S+S+E + ++ N ++ A R A+ KL + + ++ + +++DD
Sbjct: 209 LTADSPSSRRTSKSLEENSSETTNDSISLADDEETREAY--RKLFKDFAMSSQKMTLDDF 266
Query: 583 VKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 479
+E SN G L TV+++ V N + SN+
Sbjct: 267 KQEFSNLPGDPPSDLCTVFNHPVN--NKKNRYSNI 299
>Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 694 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 530
LN+ L + L DN + + + ++ D ++K +G N NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201
Query: 529 YDYGVKSPNAASTSSNVT 476
YDY V SP +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218
>Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -1
Query: 694 LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 530
LN+ L + L DN + + + ++ D ++K +G N NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201
Query: 529 YDYGVKSPNAASTSSNVT 476
YDY V SP +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218
>Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical
protein C47E8.3 protein.
Length = 405
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 528 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 704
Y + + + + T+ E ++ SS++ GF +Y +LN ++S + R + F NRL
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333
Query: 705 SSDSTDSL 728
+ S D+L
Sbjct: 334 HTASVDTL 341
>Z92804-5|CAD89722.2| 320|Caenorhabditis elegans Hypothetical
protein K05D4.8 protein.
Length = 320
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 139 SLFIYYLLTYKIWYTSVQIVSVQRHCHVIKHI-CSFIVII-FKFIF 8
S Y L IW TS + S Q H + HI C F++II KFI+
Sbjct: 196 SALAYIPLILNIWKTSKHLKSAQLH-KLQNHIMCQFLLIIASKFIY 240
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 488 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 664
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715
Query: 665 H 667
H
Sbjct: 716 H 716
>Z19154-8|CAE17741.1| 335|Caenorhabditis elegans Hypothetical
protein C40H1.9 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -2
Query: 300 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 187
C+NC +WC +++ S F KI+L L TKP +
Sbjct: 25 CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 488 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 664
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 677 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 736
Query: 665 H 667
H
Sbjct: 737 H 737
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 488 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 664
RC RV R ++ Q + V+ H F+ L + Y R + + A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715
Query: 665 H 667
H
Sbjct: 716 H 716
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 145 KKSLFIYYLLTYKIWYTSVQIVSVQRH 65
+K++FI +LT+ +W + I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233
>AF031841-1|AAC13677.1| 601|Caenorhabditis elegans GLY7 protein.
Length = 601
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 73 QRHCHVIKHICSFIVIIFKFIFN 5
QR C V +IC ++++F F++N
Sbjct: 16 QRGCRVATYICLGVLVLFGFVYN 38
>AC006774-7|AAF60620.1| 601|Caenorhabditis elegans Glycosylation
related protein 7 protein.
Length = 601
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 73 QRHCHVIKHICSFIVIIFKFIFN 5
QR C V +IC ++++F F++N
Sbjct: 16 QRGCRVATYICLGVLVLFGFVYN 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,777,788
Number of Sequences: 27780
Number of extensions: 365700
Number of successful extensions: 1107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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