Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n07
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   3.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    24   4.7  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    23   8.3  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    23   8.3  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    23   8.3  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    23   8.3  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    23   8.3  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 82  PFHVSCH*IIDKMLFRCATCGYVSVIL*NLNRNISAYKVLKNQRSPQRM 228
           P H  CH    +  +RC TC Y ++I  N+N   S +++L  +   Q M
Sbjct: 293 PLHQRCHEEYIRTNYRCPTC-YKTII--NVN---SLFRILDMEIERQPM 335


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 250  SPSAELEPSAVDYADFSKLYKLI-YFDLNFTR*QKH 146
            S + + E    D    + +Y+L+ YFDLNF+   KH
Sbjct: 999  SENVKKEGELTDVQIEAAIYELLDYFDLNFSIIAKH 1034


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 238 ELEPSAVDYADFSKLYKLIYFDLN 167
           +L+PS+ D    SK+YK+I   LN
Sbjct: 673 DLDPSSHDTTITSKIYKIIRDMLN 696


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 139 TSHNGTTFYQLFNDMKHEKVR 77
           T H+GT  Y LFN   +++ R
Sbjct: 613 TYHDGTVRYNLFNTYGYDQSR 633


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 208 QRSPQRMALIQRMVKG 255
           Q SPQ +A++QR +KG
Sbjct: 678 QLSPQHIAMMQRELKG 693


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 271 LRYG*IPSPSAELEPSAVDYADFSKLYKLI 182
           L  G +P  ++E E +   Y+D SKL  L+
Sbjct: 26  LEKGPLPEHNSEGESTLPPYSDISKLANLV 55


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 244 SAELEPSAVDYADFSKLYKLIYFDLNFTR 158
           SA  +    +Y  FS LY+L+Y    F R
Sbjct: 409 SAGNQGGLAEYVGFSPLYELVYVWNGFRR 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,118,410
Number of Sequences: 5004
Number of extensions: 19122
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)