Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n07
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809...    25   6.8  
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    25   9.0  

>08_02_0702 -
           20179838-20180040,20180397-20180464,20180642-20180970,
           20181058-20181258,20181369-20181501,20181576-20181619,
           20181694-20181753,20181872-20181931,20182840-20182921,
           20183292-20183368,20183649-20183726,20183997-20184143,
           20184189-20184254,20184376-20184417,20184513-20184992
          Length = 689

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 138 VWLCFCYLVKFKSKYI 185
           VW C  YLV F+ +YI
Sbjct: 196 VWWCLIYLVCFEQRYI 211


>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 62  LLIDPSYLFMFHVIK*LIKCCSVVRRVAMFLLSCEI*IEIYQLI 193
           LLID SYL +   +K +I C     ++ + ++ C    E+++LI
Sbjct: 257 LLIDLSYLVLHRYVKEVIIC---GLKIQLIIVCCTFQSELHKLI 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,567,494
Number of Sequences: 37544
Number of extensions: 104564
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)