Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n07
         (281 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66619-1|AAC50697.1|  469|Homo sapiens SWI/SNF complex 60 KDa su...    29   2.7  
BC110350-1|AAI10351.1|  470|Homo sapiens SWI/SNF related, matrix...    29   2.7  
BC002628-1|AAH02628.1|  470|Homo sapiens SWI/SNF related, matrix...    29   2.7  
AY450431-1|AAR88511.1|  470|Homo sapiens 60kDa BRG-1/Brm associa...    29   2.7  
AY450430-1|AAR88510.1|  483|Homo sapiens 60kDa BRG-1/Brm associa...    29   2.7  
AC021097-1|AAS00380.1|  170|Homo sapiens unknown protein.              29   2.7  
BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein.       27   8.4  
AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335...    27   8.4  
AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zip...    27   8.4  

>U66619-1|AAC50697.1|  469|Homo sapiens SWI/SNF complex 60 KDa
           subunit protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  CVLLKFKQVPEKQSELLIDPSYLFMFHVI 103
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 303 CPRLKFSEIPQRLTALLLPPDPIVINHVI 331


>BC110350-1|AAI10351.1|  470|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  CVLLKFKQVPEKQSELLIDPSYLFMFHVI 103
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 304 CPRLKFSEIPQRLTALLLPPDPIVINHVI 332


>BC002628-1|AAH02628.1|  470|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  CVLLKFKQVPEKQSELLIDPSYLFMFHVI 103
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 304 CPRLKFSEIPQRLTALLLPPDPIVINHVI 332


>AY450431-1|AAR88511.1|  470|Homo sapiens 60kDa BRG-1/Brm associated
           factor subunit c isoform 1 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  CVLLKFKQVPEKQSELLIDPSYLFMFHVI 103
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 304 CPRLKFSEIPQRLTALLLPPDPIVINHVI 332


>AY450430-1|AAR88510.1|  483|Homo sapiens 60kDa BRG-1/Brm associated
           factor subunit c isoform 2 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  CVLLKFKQVPEKQSELLIDPSYLFMFHVI 103
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 317 CPRLKFSEIPQRLTALLLPPDPIVINHVI 345


>AC021097-1|AAS00380.1|  170|Homo sapiens unknown protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  CVLLKFKQVPEKQSELLIDPSYLFMFHVI 103
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 4   CPRLKFSEIPQRLTALLLPPDPIVINHVI 32


>BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein.
          Length = 1121

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  FHVSCH*IIDKMLFRCATCGYVS 153
           FHV+ H   D  LF+C  C Y S
Sbjct: 261 FHVNSHEAGDPQLFKCLQCSYRS 283


>AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335
           protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  FHVSCH*IIDKMLFRCATCGYVS 153
           FHV+ H   D  LF+C  C Y S
Sbjct: 482 FHVNSHEAGDPQLFKCLQCSYRS 504


>AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zipper
           co-transducer NIF1 protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  FHVSCH*IIDKMLFRCATCGYVS 153
           FHV+ H   D  LF+C  C Y S
Sbjct: 482 FHVNSHEAGDPQLFKCLQCSYRS 504


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,134,383
Number of Sequences: 237096
Number of extensions: 599472
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)