Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n06
         (851 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-301|AAX52653.1|  386|Drosophila melanogaster CG31931-PA...    32   1.1  
AE014296-1323|AAN12020.1|  294|Drosophila melanogaster CG32371-P...    31   2.0  
S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase...    31   2.7  
AY070709-1|AAL48180.1|  652|Drosophila melanogaster SD02261p pro...    31   2.7  
AE014296-3203|AAF49118.1|  652|Drosophila melanogaster CG8743-PA...    31   2.7  
BT014672-1|AAT27296.1|  294|Drosophila melanogaster AT13084p pro...    30   3.5  
AY128464-1|AAM75057.1|  659|Drosophila melanogaster RE19005p pro...    30   3.5  
AY060958-1|AAL28506.1|  568|Drosophila melanogaster GM08907p pro...    30   3.5  
AE014296-1984|AAN11876.1|  649|Drosophila melanogaster CG6091-PC...    30   3.5  
AE014296-1983|AAF50041.1|  649|Drosophila melanogaster CG6091-PA...    30   3.5  
AY071145-1|AAL48767.1|  520|Drosophila melanogaster RE18068p pro...    29   8.1  
AE014297-1231|AAF54580.2|  520|Drosophila melanogaster CG4674-PA...    29   8.1  

>AE014134-301|AAX52653.1|  386|Drosophila melanogaster CG31931-PA
           protein.
          Length = 386

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 98  FVPSLLSDVWNVWLLIVACSVTSAACQ*TA 187
           F  SLL ++W+ WL I AC +T  A   TA
Sbjct: 288 FPNSLLINIWDFWLCIAACDLTEKAGDETA 317


>AE014296-1323|AAN12020.1|  294|Drosophila melanogaster CG32371-PA
           protein.
          Length = 294

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 225 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 49
           +A+ DLA TE    VH    + TE A+  ++   T   SEG+ +  R    +  R+ Q R
Sbjct: 199 SAQTDLAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258


>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
            polymerase-primase 180 kdasubunit protein.
          Length = 1490

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 516  NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 424
            NI DY+ ++K+  NI++  NK L  Q+EL+I
Sbjct: 1023 NITDYDQVYKIGHNIKQSVNK-LYKQEELDI 1052


>AY070709-1|AAL48180.1|  652|Drosophila melanogaster SD02261p
           protein.
          Length = 652

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 100 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 216
           RS AT   C+  L     +F  F  LS   +W++  C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549


>AE014296-3203|AAF49118.1|  652|Drosophila melanogaster CG8743-PA
           protein.
          Length = 652

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 100 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 216
           RS AT   C+  L     +F  F  LS   +W++  C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549


>BT014672-1|AAT27296.1|  294|Drosophila melanogaster AT13084p
           protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 225 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 49
           +A+ D+A TE    VH    + TE A+  ++   T   SEG+ +  R    +  R+ Q R
Sbjct: 199 SAQTDMAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258


>AY128464-1|AAM75057.1|  659|Drosophila melanogaster RE19005p
           protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -2

Query: 709 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 548
           E + V+    H   +RN V+      RR  V+++ A+THR  P +S   +  ++H  H H
Sbjct: 32  EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91


>AY060958-1|AAL28506.1|  568|Drosophila melanogaster GM08907p
           protein.
          Length = 568

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -2

Query: 709 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 548
           E + V+    H   +RN V+      RR  V+++ A+THR  P +S   +  ++H  H H
Sbjct: 32  EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91


>AE014296-1984|AAN11876.1|  649|Drosophila melanogaster CG6091-PC,
           isoform C protein.
          Length = 649

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -2

Query: 709 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 548
           E + V+    H   +RN V+      RR  V+++ A+THR  P +S   +  ++H  H H
Sbjct: 32  EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91


>AE014296-1983|AAF50041.1|  649|Drosophila melanogaster CG6091-PA,
           isoform A protein.
          Length = 649

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -2

Query: 709 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 548
           E + V+    H   +RN V+      RR  V+++ A+THR  P +S   +  ++H  H H
Sbjct: 32  EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91


>AY071145-1|AAL48767.1|  520|Drosophila melanogaster RE18068p
           protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 686 NNTSTAVPKFRFATIQSF*TGCSNT*IRTRSVGCITM 576
           NN++TAV K RF  +Q + T  S+  +R + V CI +
Sbjct: 204 NNSTTAVEKLRFTVLQ-YVTYYSHVPLRVQKVECIAV 239


>AE014297-1231|AAF54580.2|  520|Drosophila melanogaster CG4674-PA
           protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 686 NNTSTAVPKFRFATIQSF*TGCSNT*IRTRSVGCITM 576
           NN++TAV K RF  +Q + T  S+  +R + V CI +
Sbjct: 204 NNSTTAVEKLRFTVLQ-YVTYYSHVPLRVQKVECIAV 239


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,164,574
Number of Sequences: 53049
Number of extensions: 806834
Number of successful extensions: 2482
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)