Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n06
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.2  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 618 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 466
           KH++   L R YY  +N +  TT+++   V++ +F I D     ++   + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 618 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 466
           KH++   L R YY  +N +  TT+++   V++ +F I D     ++   + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 316 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 423
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 316 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 423
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 172 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 252
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 566 PCFTRPWKTMPCPIASSTL 510
           PCF  P  ++P P A   L
Sbjct: 469 PCFEEPLPSLPLPGADDDL 487


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 551 PWKTMPCPIASSTLRITITYLR 486
           P +T P P +++ +  TIT+LR
Sbjct: 293 PPETQPTPPSATLVGTTITHLR 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,117
Number of Sequences: 438
Number of extensions: 5448
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)