Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n04
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    31   0.93 
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754...    29   3.8  
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    29   3.8  
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12...    29   5.0  
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838...    29   6.6  

>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 851  PEQKDDFMXAIKPLETLNIESDIIKTEQTDAPATSGDDNNNRKV-VDANEDEYTVDGLKL 675
            PE+K DF+ A + L++ +I    +  E ++     G+D   +KV +D  ED   +   KL
Sbjct: 1331 PEEKVDFIGASESLDSSSIADHELPDESSEKEVNMGEDEGKKKVELDDWEDAAEMSTPKL 1390

Query: 674  K 672
            +
Sbjct: 1391 E 1391


>12_01_0819 +
           7545656-7546006,7546087-7546162,7547196-7547401,
           7547498-7547584,7547673-7547765,7548172-7548326,
           7548470-7548554,7548632-7548718,7548801-7548920,
           7549707-7549808,7549903-7550070
          Length = 509

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 264 NMNTSVDAVTKLIRLQNDVLD-MMREVDQYLNSDTPDYTIESLNAP 130
           N+    +  T+L+RL+  +L   ++  ++++N D PD+T+    AP
Sbjct: 459 NLEPKKEVATRLVRLEKKLLHGCLQAANEFIN-DLPDHTVSPCPAP 503


>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 863 PLTTPEQKDDFMXAIKPLETLNIESDI---IKTEQTDAPATSG 744
           P T  E K D     +PL+T N +S     +KT   +APATSG
Sbjct: 215 PKTNDEPKIDTSLGSQPLDTQNSKSSGARGLKTLSVEAPATSG 257


>05_01_0018 +
           125697-126130,126231-126356,126726-126825,126950-126969,
           127118-127220,127331-127469,127577-127791,127873-128523
          Length = 595

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 860 LTTPEQKDDFMXAIKPLETLNIESDIIKTEQ--TDAPATSGDDNNNRKVVDANEDEYTVD 687
           L  P+   + M  I+ L+   +E    KT    ++   +SGDD NN  +    +D    D
Sbjct: 375 LENPQINREMMDLIESLQRKAVEEGDTKTSSDVSNGAESSGDDGNNEALEKGEDDSSLKD 434

Query: 686 GLKLK 672
              LK
Sbjct: 435 DGSLK 439


>01_01_1062 +
           8381281-8381490,8382353-8382449,8382546-8382637,
           8382729-8382860,8382975-8383160,8383244-8383407,
           8383514-8383592,8384484-8384612,8385102-8385229,
           8385348-8385711
          Length = 526

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 788 DIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 633
           +I+K  +TD    +GD N   +++D  E    ++ L+       Y K +KIL
Sbjct: 438 NILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKIL 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,622,559
Number of Sequences: 37544
Number of extensions: 438217
Number of successful extensions: 1320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)