Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n03
(199 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39 pro... 95 3e-20
D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39 pro... 95 3e-20
BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39 p... 95 3e-20
BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39 p... 95 3e-20
AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39 p... 95 3e-20
AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39 v... 93 2e-19
L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39 pro... 90 1e-18
BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-l... 90 1e-18
AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2... 90 1e-18
AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-l... 90 1e-18
AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-l... 54 8e-08
AB046411-1|BAB21257.1| 17|Homo sapiens ribosomal protein L39 p... 28 4.8
Y12395-1|CAA73027.1| 608|Homo sapiens interferon-related IFRD2 ... 27 8.4
BC013998-1|AAH13998.1| 324|Homo sapiens paired-like homeodomain... 27 8.4
AF048722-1|AAC39718.1| 324|Homo sapiens ALL1 responsive protein... 27 8.4
>U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39
variant protein.
Length = 70
Score = 92.7 bits (220), Expect = 2e-19
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IK+ LAKK KQNRPIPQW+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 20 MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70
>L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2
protein.
Length = 51
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 16
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-like
protein.
Length = 29
Score = 54.0 bits (124), Expect = 8e-08
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKKLKQNRPIPQWVRM 82
MS+HKTF IKR LAKK KQNRPIPQW++M
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQM 29
>AB046411-1|BAB21257.1| 17|Homo sapiens ribosomal protein L39
protein.
Length = 17
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 168 MSAHKTFIIKRKLAKK 121
MS+HKTF IKR LAKK
Sbjct: 1 MSSHKTFRIKRFLAKK 16
>Y12395-1|CAA73027.1| 608|Homo sapiens interferon-related IFRD2
(PC4-B) protein protein.
Length = 608
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 108 RPIPQWVRMRTGNTIRYNAKRR 43
RP+P R R GNT+R +RR
Sbjct: 162 RPVPGMPRARKGNTLRKGGQRR 183
>BC013998-1|AAH13998.1| 324|Homo sapiens paired-like homeodomain
transcription factor 2 protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 43 TPLSVISNSVSCAHPYPLRNGSVL 114
T LS +S+S SC HP PL SVL
Sbjct: 17 TKLSAVSSS-SCHHPQPLAMASVL 39
>AF048722-1|AAC39718.1| 324|Homo sapiens ALL1 responsive protein
ARP1c protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 43 TPLSVISNSVSCAHPYPLRNGSVL 114
T LS +S+S SC HP PL SVL
Sbjct: 17 TKLSAVSSS-SCHHPQPLAMASVL 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,216,674
Number of Sequences: 237096
Number of extensions: 440408
Number of successful extensions: 1131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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