Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10n01
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   2.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   6.5  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    24   6.5  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    24   6.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   8.6  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   8.6  

>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 218 ELPRFSCTPECSWICAIR 271
           ELPRF   P+C ++C ++
Sbjct: 212 ELPRFPDDPKCRYLCELQ 229


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 282 TRGARIAQIQLHSGVHEKRGSSAS 211
           TR  RI Q  +HSG    +GS+++
Sbjct: 809 TRAVRIQQSNIHSGNTSGKGSNSA 832


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 217 SKFYWKITLPLLMLTKPPIS 158
           S  YW  T+P L L  P IS
Sbjct: 144 SSIYWSSTVPELALRNPNIS 163


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = -3

Query: 104 IYYLLTYKIWYTSVQIVSVQRHCHVIKHICSF 9
           +Y+ + + I++T + ++    +C+V   I S+
Sbjct: 397 VYFFIKFDIYFTLIVLIMTLCYCYVTVKITSW 428


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 FFVLLIHFSV*FIVFEIGGLVSINSGKVIFQ*NLLSCLVFRV 239
           F   L    V F +F +   V+I +  V+F   LL+CL F +
Sbjct: 95  FLSFLSAIFVFFSIFLVNQAVNIINIIVVFITTLLTCLAFAI 136


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 9   KTTNVFYNMTMALNRNDLNTS 71
           KTTN+F       +R DL+TS
Sbjct: 555 KTTNIFIQFYSNSHRGDLSTS 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,333
Number of Sequences: 5004
Number of extensions: 24832
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)