Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n01
(325 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X94216-1|CAA63907.1| 419|Homo sapiens VEGF-C protein. 36 0.037
U58111-1|AAB02909.1| 419|Homo sapiens FLT4 ligand DHM protein. 36 0.037
U43142-1|AAA85214.1| 419|Homo sapiens vascular endothelial grow... 36 0.037
CR541897-1|CAG46695.1| 419|Homo sapiens VEGFC protein. 36 0.037
BC063685-1|AAH63685.1| 419|Homo sapiens vascular endothelial gr... 36 0.037
BC035212-1|AAH35212.1| 419|Homo sapiens vascular endothelial gr... 36 0.037
Y12864-1|CAA73371.1| 354|Homo sapiens growth factor FIGF protein. 31 0.80
Y12863-1|CAA73370.1| 354|Homo sapiens growth factor FIGF protein. 31 0.80
D89630-1|BAA24264.1| 354|Homo sapiens VEGF-D protein. 31 0.80
BC027948-1|AAH27948.1| 354|Homo sapiens c-fos induced growth fa... 31 0.80
AJ000185-1|CAA03942.1| 354|Homo sapiens vascular endothelial gr... 31 0.80
M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein. 31 1.1
AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1, transl... 31 1.1
AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1, transl... 31 1.1
AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein. 31 1.1
AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein va... 31 1.1
AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein. 27 9.8
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein. 27 9.8
>X94216-1|CAA63907.1| 419|Homo sapiens VEGF-C protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>U58111-1|AAB02909.1| 419|Homo sapiens FLT4 ligand DHM protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>U43142-1|AAA85214.1| 419|Homo sapiens vascular endothelial growth
factor related protein protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>CR541897-1|CAG46695.1| 419|Homo sapiens VEGFC protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>BC063685-1|AAH63685.1| 419|Homo sapiens vascular endothelial
growth factor C protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>BC035212-1|AAH35212.1| 419|Homo sapiens vascular endothelial
growth factor C protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>Y12864-1|CAA73371.1| 354|Homo sapiens growth factor FIGF protein.
Length = 354
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>Y12863-1|CAA73370.1| 354|Homo sapiens growth factor FIGF protein.
Length = 354
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>D89630-1|BAA24264.1| 354|Homo sapiens VEGF-D protein.
Length = 354
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>BC027948-1|AAH27948.1| 354|Homo sapiens c-fos induced growth
factor (vascular endothelial growth factor D) protein.
Length = 354
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>AJ000185-1|CAA03942.1| 354|Homo sapiens vascular endothelial
growth factor D protein.
Length = 354
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 277 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 140
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.
Length = 2444
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 90 NIQNLVH*CSNRFCSTPLSCYKTHL*FYC 4
N QNLVH C + C C++TH + C
Sbjct: 1056 NCQNLVHWCDSSPCKNGGKCWQTHTQYRC 1084
>AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1,
translocation-associated (Drosophila) protein.
Length = 2555
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 90 NIQNLVH*CSNRFCSTPLSCYKTHL*FYC 4
N QNLVH C + C C++TH + C
Sbjct: 1055 NCQNLVHWCDSSPCKNGGKCWQTHTQYRC 1083
>AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1,
translocation-associated (Drosophila) protein.
Length = 2555
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 90 NIQNLVH*CSNRFCSTPLSCYKTHL*FYC 4
N QNLVH C + C C++TH + C
Sbjct: 1055 NCQNLVHWCDSSPCKNGGKCWQTHTQYRC 1083
>AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.
Length = 2556
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 90 NIQNLVH*CSNRFCSTPLSCYKTHL*FYC 4
N QNLVH C + C C++TH + C
Sbjct: 1056 NCQNLVHWCDSSPCKNGGKCWQTHTQYRC 1084
>AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein
variant protein.
Length = 2067
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 90 NIQNLVH*CSNRFCSTPLSCYKTHL*FYC 4
N QNLVH C + C C++TH + C
Sbjct: 567 NCQNLVHWCDSSPCKNGGKCWQTHTQYRC 595
>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
Length = 6884
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 245 LVYTKNE-AAQQVLLENNFTAINADQTAYLKNYKSYREM 132
L YT E ++ ++ F A + YL+NYK YR+M
Sbjct: 3328 LQYTLQELVSKNSAMKEAFKAQETEAERYLENYKCYRKM 3366
>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
Length = 6885
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 245 LVYTKNE-AAQQVLLENNFTAINADQTAYLKNYKSYREM 132
L YT E ++ ++ F A + YL+NYK YR+M
Sbjct: 3329 LQYTLQELVSKNSAMKEAFKAQETEAERYLENYKCYRKM 3367
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,740,608
Number of Sequences: 237096
Number of extensions: 844762
Number of successful extensions: 5240
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5240
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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