Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10n01
(325 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19154-8|CAE17741.1| 335|Caenorhabditis elegans Hypothetical pr... 28 1.3
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 28 1.3
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z69793-8|CAA93674.2| 354|Caenorhabditis elegans Hypothetical pr... 27 3.1
AL008867-3|CAC14271.1| 354|Caenorhabditis elegans Hypothetical ... 27 3.1
AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical... 27 4.1
AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical... 27 4.1
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical... 27 4.1
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam... 27 4.1
AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gam... 27 4.1
U41510-7|AAK39381.2| 76|Caenorhabditis elegans Hypothetical pr... 26 5.4
U64599-6|AAL11464.1| 284|Caenorhabditis elegans Unidentified vi... 26 7.2
U64599-5|AAM69110.1| 303|Caenorhabditis elegans Unidentified vi... 26 7.2
U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified vi... 26 7.2
AL008866-1|CAA15509.3| 724|Caenorhabditis elegans Hypothetical ... 26 7.2
Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical p... 25 9.5
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 25 9.5
Z78067-9|CAB01528.2| 450|Caenorhabditis elegans Hypothetical pr... 25 9.5
U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 25 9.5
U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone... 25 9.5
AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear recep... 25 9.5
>Z19154-8|CAE17741.1| 335|Caenorhabditis elegans Hypothetical
protein C40H1.9 protein.
Length = 335
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -1
Query: 274 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 161
C+NC +WC +++ S F KI+L L TKP +
Sbjct: 25 CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 119 KKSLFIYYLLTYKIWYTSVQIVSVQRH 39
+K++FI +LT+ +W + I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 312 DRPQHGAAVRTRGARIAQIQLHSGVHEKRGSS 217
D P H AA +T G R++ I SG G S
Sbjct: 92 DHPAHAAAAKTHGTRLSGIAGQSGGAPPSGPS 123
>Z69793-8|CAA93674.2| 354|Caenorhabditis elegans Hypothetical
protein R03A10.6 protein.
Length = 354
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 27 YNMTMALNRNDLNTSVPNFVC**IIYK*TFFVLLIH 134
Y T++ +NDL T +P+F C I Y F + H
Sbjct: 87 YYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFH 122
>AL008867-3|CAC14271.1| 354|Caenorhabditis elegans Hypothetical
protein R03A10.6 protein.
Length = 354
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 27 YNMTMALNRNDLNTSVPNFVC**IIYK*TFFVLLIH 134
Y T++ +NDL T +P+F C I Y F + H
Sbjct: 87 YYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFH 122
>AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical
protein Y39A1A.15c protein.
Length = 903
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 283 NERCANCANPTALWCT 236
N RCA+C NP++ W +
Sbjct: 630 NGRCADCGNPSSEWAS 645
>AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical
protein Y39A1A.15b protein.
Length = 951
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 283 NERCANCANPTALWCT 236
N RCA+C NP++ W +
Sbjct: 678 NGRCADCGNPSSEWAS 693
>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
protein Y39A1A.15a protein.
Length = 1107
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 283 NERCANCANPTALWCT 236
N RCA+C NP++ W +
Sbjct: 834 NGRCADCGNPSSEWAS 849
>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
1B protein.
Length = 1107
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 283 NERCANCANPTALWCT 236
N RCA+C NP++ W +
Sbjct: 834 NGRCADCGNPSSEWAS 849
>AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gamma
1A protein.
Length = 952
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 283 NERCANCANPTALWCT 236
N RCA+C NP++ W +
Sbjct: 679 NGRCADCGNPSSEWAS 694
>U41510-7|AAK39381.2| 76|Caenorhabditis elegans Hypothetical
protein ZC449.4 protein.
Length = 76
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 248 TLVYTKNEAAQQVLLENNFTAIN 180
++VY K E AQ+ L NNF IN
Sbjct: 52 SMVYIKKEKAQERLPINNFAPIN 74
>U64599-6|AAL11464.1| 284|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform b
protein.
Length = 284
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 3 YNKTTNVFYNMTMALNRNDLNTSVPNFV 86
YN T FY A R NT + +F+
Sbjct: 186 YNMTAGAFYTYAAAYKRYGANTKIVHFI 213
>U64599-5|AAM69110.1| 303|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform c
protein.
Length = 303
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 3 YNKTTNVFYNMTMALNRNDLNTSVPNFV 86
YN T FY A R NT + +F+
Sbjct: 186 YNMTAGAFYTYAAAYKRYGANTKIVHFI 213
>U64599-4|AAB04562.1| 429|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 5, isoform a
protein.
Length = 429
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 3 YNKTTNVFYNMTMALNRNDLNTSVPNFV 86
YN T FY A R NT + +F+
Sbjct: 186 YNMTAGAFYTYAAAYKRYGANTKIVHFI 213
>AL008866-1|CAA15509.3| 724|Caenorhabditis elegans Hypothetical
protein B0019.1 protein.
Length = 724
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 265 CANPTALWCTRKTRQLS-KFYWKITLPLLMLTKPPISKTINHT 140
C N T TRK RQLS + W TL ++ P + +T
Sbjct: 131 CGNNTVFQQTRKKRQLSLQQQWSTTLFTDLINSPETLGNLTNT 173
>Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical
protein F45G2.2b protein.
Length = 390
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 287 SEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAINADQTAYLKNYKSYREMN 129
+ER+ ELR L EA+ Q+ E + + A++ + L+ R +N
Sbjct: 277 AERQFNELRSEYEVLQEQMAEASGQLTAEAHINKVRAEEVSNLRRDLQKRNLN 329
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 287 SEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAINADQTAYLKNYKSYREMN 129
+ER+ ELR L EA+ Q+ E + + A++ + L+ R +N
Sbjct: 1122 AERQFNELRSEYEVLQEQMAEASGQLTAEAHINKVRAEEVSNLRRDLQKRNLN 1174
>Z78067-9|CAB01528.2| 450|Caenorhabditis elegans Hypothetical
protein ZC412.1 protein.
Length = 450
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 314 LIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAINAD 174
L DP REL+ SNC L+ Q V +N+ AIN D
Sbjct: 380 LADPTCTSRERSLPRELQ-SNCFLLVPLMPLCQSVTRKNSHLAINRD 425
>U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 20 protein.
Length = 330
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 245 LVYTKNEAAQQVLLENNF-TAINADQTAYLKNYK 147
++ K + + +V LE + T + ADQ+ Y +N+K
Sbjct: 293 VILFKRDRSSRVKLEKSLETHVQADQSIYFENFK 326
>U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 42 protein.
Length = 356
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 120 VLLIHFSV*FIVFEIGGLVSINS 188
+L +HF V FI+FE GG S NS
Sbjct: 178 LLCVHFMVPFILFE-GGYKSTNS 199
>AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear receptor
NHR-42 protein.
Length = 358
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 120 VLLIHFSV*FIVFEIGGLVSINS 188
+L +HF V FI+FE GG S NS
Sbjct: 180 LLCVHFMVPFILFE-GGYKSTNS 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,451,362
Number of Sequences: 27780
Number of extensions: 139215
Number of successful extensions: 395
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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