Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m23
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    89   6e-19
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.4  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   4.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   7.8  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   7.8  

>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 89.4 bits (212), Expect = 6e-19
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
 Frame = -1

Query: 854 EYLETQGVCVCSFGE-SNEFPAFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVI 678
           E LETQGV V + G   + FPAF++  S  ++P S+   +  A +L  + +     G ++
Sbjct: 206 EVLETQGVPVVTLGPPKSAFPAFFSRESKFQSPLSLETPQLIANMLFSNIQLGQECGTLV 265

Query: 677 AVPVPRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALI 498
           A+P P   ++D + +E  I + L  + + GI GK VTP++L  +   + G SL TNI L+
Sbjct: 266 AIPTPHHCSIDYEKMEALIETCLQRSVQLGITGKNVTPWLLGELLRESKGKSLNTNIDLV 325

Query: 497 KNNARVGADIAVEFKKLKNADNVNDSNIG 411
            NNA   + IA E   LK   +   +N G
Sbjct: 326 LNNAEKASLIAKELAVLKEKSSFFPTNTG 354


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -1

Query: 554 SNVSEATSGTSLETNIALIKNNARVGADIAVEFKKLKNADN-VNDSNIGFRKGAENISNF 378
           S + E+++  S ++N A  ++  ++ +   +     +  DN +NDS I  +K + + +NF
Sbjct: 77  SMIHESSTALSAQSNTA--QDGDQLASSSTISKDHSETLDNKLNDSKILIKKASNSFANF 134

Query: 377 TRTFHTSS 354
           + +  +S+
Sbjct: 135 SESVRSST 142


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 159 LAPLNISAI*KNCHFFILIYMYIFKRCTK*NQTNNPFVL 43
           + P ++  I ++  FF  I M   KRCT  + TN+ F L
Sbjct: 201 IRPEDLKKIFRSSSFFYPILMEHIKRCTSLDLTNSVFSL 239


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 223 VSSDTL*VLSTLAPPITSTSPSAFISKASRGVSSPQFSAT 342
           VS+ T   + TL PP +STS  + I+  S   SS  F+ T
Sbjct: 178 VSTGTSTDIVTLPPPASSTSSFSTITNTSMIPSSSSFTTT 217


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 413 GFRKGAENISNFTRTFHTSSNTRSVAENCGDDTPLLALDMKAD 285
           G++ G  N     +  HT++NT +  ++  D T L +  +K D
Sbjct: 103 GYKSGESNTVKEPKELHTATNTETQFDDDRDSTKLSSEYVKDD 145


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -1

Query: 662 RRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNV----SEATSGTSLETN 510
           +R+A +EKV  E   +A   A+ +G R  +  P I S+     SEA   TS +TN
Sbjct: 682 KREA-EEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDTSKQTN 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,730
Number of Sequences: 5004
Number of extensions: 63106
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)