Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m23
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1174 - 24922247-24922286,24922590-24922672,24922971-249230... 87 2e-17
12_02_0064 + 13104835-13105311,13107731-13108119,13108156-131082... 37 0.018
10_05_0019 - 8049145-8049334,8059808-8060618,8060708-8060783,806... 31 0.89
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 31 1.2
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 31 1.5
02_02_0608 + 12099967-12100355,12100401-12100482 30 2.0
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416... 30 2.7
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 29 4.7
11_06_0482 - 24095258-24095827,24095934-24095993 29 6.2
>08_02_1174 -
24922247-24922286,24922590-24922672,24922971-24923082,
24923495-24923615,24924015-24924060,24924348-24924425,
24925261-24925365
Length = 194
Score = 87.0 bits (206), Expect = 2e-17
Identities = 57/136 (41%), Positives = 76/136 (55%)
Frame = -1
Query: 854 EYLETQGVCVCSFGESNEFPAFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVIA 675
EYLETQGV V ++ ++NEFPAF+T SG + P V + A+I++ + HL SG++IA
Sbjct: 33 EYLETQGVTVAAY-KTNEFPAFFTEVSGCKVPCRVDSPEECAKIIYANKNLHLGSGILIA 91
Query: 674 VPVPRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALIK 495
VP+P+ A IE AI AL +A+ N S A S +IAL+K
Sbjct: 92 VPIPKEHAASGNAIESAIQKALKEAE---------------NFSLAYS------DIALVK 130
Query: 494 NNARVGADIAVEFKKL 447
NNA VGA IAV L
Sbjct: 131 NNALVGAKIAVALSDL 146
>12_02_0064 +
13104835-13105311,13107731-13108119,13108156-13108286,
13108378-13108469,13108488-13109264,13109291-13109320
Length = 631
Score = 37.1 bits (82), Expect = 0.018
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = -1
Query: 659 RDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALIKNNARV 480
RD +E EE + + + AK + + G+ VTP S + T +E+N + ++
Sbjct: 419 RDGEEEGGEEEEVETVVEKAKGEAVEGRAVTPGYTPTPSPGHNETGVESNSSPLRQKYLD 478
Query: 479 GADIAVEFKKLKNADNVNDSNIGFRKGAENISNFTRTFHTSSNT 348
GA V F K A + +KG +++ +S T
Sbjct: 479 GAKALVAFSSGKAAKGGLVKKVAKKKGLVDVARVFSGDESSDGT 522
>10_05_0019 -
8049145-8049334,8059808-8060618,8060708-8060783,
8060856-8061008
Length = 409
Score = 31.5 bits (68), Expect = 0.89
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
Frame = -1
Query: 668 VPRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALIKNN 489
V RD +E EE + + A + + TP S + T +E+N + +
Sbjct: 166 VKERDGNEEGEEEEKAEAVVEKAADEVVENCVDTPGYTPTPSPGHNETGVESNSSPLHRK 225
Query: 488 ARVGADIAVEFKKLKNADNVNDSNIGFRKGAENISNFTRTFHTSSNT-RSVAENCGD--D 318
GA V F K A+ I +KG +++ +S T S A + D
Sbjct: 226 DLEGAKALVAFSVGKTANGGPVKKISKKKGLVDVARVFSNDESSDETLTSPAGHSLDLST 285
Query: 317 TPLLALDMKADGDVLVIGG-ANVDR 246
P+L+LD G G A+ DR
Sbjct: 286 APILSLDAGGVGGSAAAGALASADR 310
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = -1
Query: 821 SFGESNEFP-AFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVIAVPVPRRDAMD 645
SF FP A VR + YS + K ++L L +G+V +VP+P DA
Sbjct: 291 SFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEEDLKNGIVGSVPIPPDDADK 350
Query: 644 EKVIEEAINS--ALTDAKRKGIRGKEVTPYI 558
E+VI + + ++ A RK K++ +I
Sbjct: 351 EEVINALVANVESMIKADRKITSLKQLQGHI 381
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -1
Query: 359 SSNTRSVAENCGDDTPLLALDMKADGDVLVIGGANVDRTYRVSEDTIQHHYVRVSER 189
S+N V C P + D+K + VIG +DR V E+T++ H VR+ R
Sbjct: 109 SANKPLVVAGC---VPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSR 162
>02_02_0608 + 12099967-12100355,12100401-12100482
Length = 156
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +3
Query: 606 RQGTIDSLFNYFFVHSVTSRHRNSDDDAGIEVESV*FVKNPS----GVLRVGNAIRSPVT 773
R GTI ++V + S+ +NSD + F+ PS G + N R
Sbjct: 61 RMGTITRELRRYYVDKLNSKRKNSDMSILGHHDQAPFLGPPSYIIVGFSDLFNLFRLRAV 120
Query: 774 GTDRVKCWKLVRLA 815
TD KC+ L+ LA
Sbjct: 121 DTDLPKCYSLMLLA 134
>03_02_0693 -
10441253-10441294,10441404-10441511,10441594-10441677,
10441765-10443062,10443111-10444804,10444890-10444957,
10445057-10445186,10445292-10445415,10445551-10445711,
10446714-10446868
Length = 1287
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/67 (20%), Positives = 38/67 (56%)
Frame = -1
Query: 650 MDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALIKNNARVGAD 471
++E+V+ + + S+ +K+ ++ P L++ +A +GT E+N++ + + D
Sbjct: 739 IEEQVVSDDLISSPISSKQSD-DPCQMAPLTLTDADDALAGTITESNVSTVVVESATTND 797
Query: 470 IAVEFKK 450
+AV++ +
Sbjct: 798 VAVQYNE 804
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/109 (22%), Positives = 50/109 (45%)
Frame = -1
Query: 812 ESNEFPAFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVIAVPVPRRDAMDEKVI 633
E + PA V + + KHA I+H++ + HL S V+ + V D D ++
Sbjct: 424 ELSTLPALVPVFTSASGETLLLLVKHADLIIHKATQEHLISH-VLPMLVRAYDDTDPRLQ 482
Query: 632 EEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALIKNNA 486
EE + + +++ ++ + +V G +L+T +A ++ NA
Sbjct: 483 EEVLRRTVPLSRQLDVK------LLKQSVLPRVHGLALKTTVAAVRVNA 525
>11_06_0482 - 24095258-24095827,24095934-24095993
Length = 209
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Frame = -1
Query: 719 HESHRFH-LNSGVVIAVPVPRRDAMDEKVIEEAI--------NSALTDAKRKGIRGKEVT 567
H H+F+ S +++ P A D++ EE +S D +G +GK+
Sbjct: 71 HHHHQFYSFQSSKIMSPPAAAAAAADQEEEEECDLQLTLATGSSGGGDGTARGHKGKKEV 130
Query: 566 PYILSNVSEATSGTSLETNIALIKNNARVGADIA 465
S+ A S TS E+ +A KN+ D A
Sbjct: 131 RSSNSDSGTAASSTSTESELAQFKNHHHHQLDCA 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,958,264
Number of Sequences: 37544
Number of extensions: 399740
Number of successful extensions: 1053
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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