Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m23
         (854 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U69274-1|AAD00172.1| 1053|Homo sapiens zinc finger protein protein.    31   7.1  
BC111700-1|AAI11701.1| 1053|Homo sapiens zinc finger and BTB dom...    31   7.1  
AB208862-1|BAD92099.1|  700|Homo sapiens zinc finger protein ZNF...    31   7.1  

>U69274-1|AAD00172.1| 1053|Homo sapiens zinc finger protein protein.
          Length = 1053

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -1

Query: 623 INSALTDAKRKGIRGKEVTPYILSNVSEATSGTS-LETNIALIKNNARVGADIAVEFKKL 447
           +N  L +A++ G  G++  P + S    A S    +  +   +++   +  +   E +  
Sbjct: 367 VNGELPEAEQNGEVGRQPEPQVSSEAESALSSVGCIADSHPEMESVDLITKNNQTELETS 426

Query: 446 KNADNVNDSNIGFRKGAENISNFTRTFHTSSNTRSVAENCGDDTP 312
            N +N   SNI  +   EN+ + +       N  S  + C +D P
Sbjct: 427 NNRENNTVSNIHPKLSKENVISSSPEDSGMGNDISAEDICAEDIP 471


>BC111700-1|AAI11701.1| 1053|Homo sapiens zinc finger and BTB domain
           containing 11 protein.
          Length = 1053

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -1

Query: 623 INSALTDAKRKGIRGKEVTPYILSNVSEATSGTS-LETNIALIKNNARVGADIAVEFKKL 447
           +N  L +A++ G  G++  P + S    A S    +  +   +++   +  +   E +  
Sbjct: 367 VNGELPEAEQNGEVGRQPEPQVSSEAESALSSVGCIADSHPEMESVDLITKNNQTELETS 426

Query: 446 KNADNVNDSNIGFRKGAENISNFTRTFHTSSNTRSVAENCGDDTP 312
            N +N   SNI  +   EN+ + +       N  S  + C +D P
Sbjct: 427 NNRENNTVSNIHPKLSKENVISSSPEDSGMGNDISAEDICAEDIP 471


>AB208862-1|BAD92099.1|  700|Homo sapiens zinc finger protein
           ZNF-U69274 variant protein.
          Length = 700

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -1

Query: 623 INSALTDAKRKGIRGKEVTPYILSNVSEATSGTS-LETNIALIKNNARVGADIAVEFKKL 447
           +N  L +A++ G  G++  P + S    A S    +  +   +++   +  +   E +  
Sbjct: 14  VNGELPEAEQNGEVGRQPEPQVSSEAESALSSVGCIADSHPEMESVDLITKNNQTELETS 73

Query: 446 KNADNVNDSNIGFRKGAENISNFTRTFHTSSNTRSVAENCGDDTP 312
            N +N   SNI  +   EN+ + +       N  S  + C +D P
Sbjct: 74  NNRENNTVSNIHPKLSKENVISSSPEDSGMGNDISAEDICAEDIP 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,296,496
Number of Sequences: 237096
Number of extensions: 2067425
Number of successful extensions: 4321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4319
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)