Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m23
         (854 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-127|AAF51480.1|  700|Drosophila melanogaster CG2794-PA ...   130   2e-30
AY113628-1|AAM29633.1|  700|Drosophila melanogaster RH71315p pro...   129   5e-30
AE013599-1447|AAF58532.2| 1983|Drosophila melanogaster CG8487-PB...    30   4.7  

>AE014134-127|AAF51480.1|  700|Drosophila melanogaster CG2794-PA
           protein.
          Length = 700

 Score =  130 bits (315), Expect = 2e-30
 Identities = 66/131 (50%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
 Frame = -1

Query: 854 EYLETQGVCVCSFGE-SNEFPAFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVI 678
           E+LETQGVCV SF      FP FYT  SG   PY++  A+ AA +L       + SG+VI
Sbjct: 194 EFLETQGVCVASFDSPGGVFPDFYTRDSGCTVPYNLKSAQEAAELLRSWRELKMESGLVI 253

Query: 677 AVPVPRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALI 498
            VP+P   A D+  IEEAI  A   A+ +GI GKEVTP++L+ +++ T G SL++NIALI
Sbjct: 254 GVPIPEEFAADKFKIEEAIKEATAQARAQGISGKEVTPFLLAAIAKITEGRSLKSNIALI 313

Query: 497 KNNARVGADIA 465
           KNNA+V A IA
Sbjct: 314 KNNAKVAAQIA 324


>AY113628-1|AAM29633.1|  700|Drosophila melanogaster RH71315p
           protein.
          Length = 700

 Score =  129 bits (311), Expect = 5e-30
 Identities = 65/131 (49%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
 Frame = -1

Query: 854 EYLETQGVCVCSFGE-SNEFPAFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVI 678
           E+LETQGVCV SF      FP FYT  SG   PY++  A+  A +L       + SG+VI
Sbjct: 194 EFLETQGVCVASFDSPGGVFPDFYTRDSGCTVPYNLKSAQETAELLRSWRELKMESGLVI 253

Query: 677 AVPVPRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALI 498
            VP+P   A D+  IEEAI  A   A+ +GI GKEVTP++L+ +++ T G SL++NIALI
Sbjct: 254 GVPIPEEFAADKFKIEEAIKEATAQARAQGISGKEVTPFLLAAIAKITEGRSLKSNIALI 313

Query: 497 KNNARVGADIA 465
           KNNA+V A IA
Sbjct: 314 KNNAKVAAQIA 324


>AE013599-1447|AAF58532.2| 1983|Drosophila melanogaster CG8487-PB,
            isoform B protein.
          Length = 1983

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 769  TGLRIALPTRSTPLGFFTNHTDSTSIPASSSL 674
            TG+  A P  +TP  +F  + D +SIP  S L
Sbjct: 1947 TGMANAFPAVATPANYFNVNVDPSSIPPGSEL 1978


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,024,035
Number of Sequences: 53049
Number of extensions: 676284
Number of successful extensions: 1994
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1992
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)