Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m23
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical pr...   101   9e-22
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    29   3.2  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    28   7.4  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical...    28   7.4  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    28   9.7  

>U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical
           protein T24C12.3 protein.
          Length = 651

 Score =  101 bits (241), Expect = 9e-22
 Identities = 48/132 (36%), Positives = 76/132 (57%)
 Frame = -1

Query: 854 EYLETQGVCVCSFGESNEFPAFYTVRSGHRAPYSVADAKHAARILHESHRFHLNSGVVIA 675
           EYLET  V    +G+ N FP+F+T  S  +A +     +    +L  S    L  G ++A
Sbjct: 180 EYLETHSVNCIVYGQENVFPSFFTRTSDRKAQFCTESLEEVVHLLKTSKSLGLPYGTILA 239

Query: 674 VPVPRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTPYILSNVSEATSGTSLETNIALIK 495
            P+P + A D   I++AI+ A+ +A  + I  + VTP+IL+ V+E T G S+ TNIAL++
Sbjct: 240 CPIPEKYAADGDAIQKAIDQAVQEAIEQNIASQSVTPFILARVNELTQGASMATNIALLE 299

Query: 494 NNARVGADIAVE 459
           NNA +   +A +
Sbjct: 300 NNASIAGRLAAK 311


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -1

Query: 668 VPRRDAMDEKVIEEAINSALTDAKRK 591
           VP+ +  +EK I+E++N+AL+D K K
Sbjct: 178 VPKVEKPEEKDIDESLNAALSDKKEK 203


>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -1

Query: 752 VADAKHAARILHESHRFHLNSGVVIAVPVPRRDAMDEKVIEEAINSALTDAKRKG 588
           VA ++ +A++   SH FH + G +I V     +  DEK++ E+   A   AK +G
Sbjct: 211 VAVSEVSAKMTQLSH-FHASHGNMIGVTAHTHNRNDEKLVAESRRVADVPAKSRG 264


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
 Frame = -1

Query: 557  LSNVSEATSGTSLETNIALIKNNARVGADIAVEFKKLKNADNVNDSNIGFRK--GAENIS 384
            L+ V++ +    LET  A ++ +     D A +F+K K    V +++    K    + + 
Sbjct: 3163 LTVVAKDSGVPPLETE-AQVEISVMDENDNAPKFEKEKYVGKVKENSKSGEKVLTVKALD 3221

Query: 383  NFTRTFHTSSNTRSVAENCGDDTPLLALDMKADGDVLVIGGANVDRTYRVSEDTIQHHYV 204
              +  F   S    +      DTP+L   + ++GDVL+    + ++  + +   I     
Sbjct: 3222 VDSEHFGAVSYELEIVSETTTDTPVLPFAINSNGDVLISQSIDYEKIKKYNLKVIAKDGG 3281

Query: 203  RVSERDSEILLLHT---NSHR*TF 141
            R   R   +L +H    N H  TF
Sbjct: 3282 RPPLRSEALLEIHVEDENDHAPTF 3305


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
 Frame = -1

Query: 557  LSNVSEATSGTSLETNIALIKNNARVGADIAVEFKKLKNADNVNDSNIGFRK--GAENIS 384
            L+ V++ +    LET  A ++ +     D A +F+K K    V +++    K    + + 
Sbjct: 3163 LTVVAKDSGVPPLETE-AQVEISVMDENDNAPKFEKEKYVGKVKENSKSGEKVLTVKALD 3221

Query: 383  NFTRTFHTSSNTRSVAENCGDDTPLLALDMKADGDVLVIGGANVDRTYRVSEDTIQHHYV 204
              +  F   S    +      DTP+L   + ++GDVL+    + ++  + +   I     
Sbjct: 3222 VDSEHFGAVSYELEIVSETTTDTPVLPFAINSNGDVLISQSIDYEKIKKYNLKVIAKDGG 3281

Query: 203  RVSERDSEILLLHT---NSHR*TF 141
            R   R   +L +H    N H  TF
Sbjct: 3282 RPPLRSEALLEIHVEDENDHAPTF 3305


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 5/144 (3%)
 Frame = -1

Query: 557  LSNVSEATSGTSLETNIALIKNNARVGADIAVEFKKLKNADNVNDSNIGFRK--GAENIS 384
            L+ V++ +    LET  A ++ +     D A +F+K K    V +++    K    + + 
Sbjct: 3163 LTVVAKDSGVPPLETE-AQVEISVMDENDNAPKFEKEKYVGKVKENSKSGEKVLTVKALD 3221

Query: 383  NFTRTFHTSSNTRSVAENCGDDTPLLALDMKADGDVLVIGGANVDRTYRVSEDTIQHHYV 204
              +  F   S    +      DTP+L   + ++GDVL+    + ++  + +   I     
Sbjct: 3222 VDSEHFGAVSYELEIVSETTTDTPVLPFAINSNGDVLISQSIDYEKIKKYNLKVIAKDGG 3281

Query: 203  RVSERDSEILLLHT---NSHR*TF 141
            R   R   +L +H    N H  TF
Sbjct: 3282 RPPLRSEALLEIHVEDENDHAPTF 3305


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 665 PRRDAMDEKVIEEAINSALTDAKRKGIRGKEVTP 564
           P  + M+E V+EE++  ++ D   + +RG+  TP
Sbjct: 642 PPPENMEENVVEESVPQSVIDVVEEIMRGRSKTP 675


>AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical
           protein F55A12.10 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 27/101 (26%), Positives = 45/101 (44%)
 Frame = -1

Query: 596 RKGIRGKEVTPYILSNVSEATSGTSLETNIALIKNNARVGADIAVEFKKLKNADNVNDSN 417
           +K +  KE T  +     E     S  T+    +NN +   DI  E +KL+N  +  +  
Sbjct: 98  KKSVMRKEQTKKVEKKTEEMHCQLSKLTSFE--ENNRKKLEDIERENEKLRNLISALELK 155

Query: 416 IGFRKGAENISNFTRTFHTSSNTRSVAENCGDDTPLLALDM 294
           +   +  ++   F +   TSSN  SVA +  D+  LL  D+
Sbjct: 156 VASSRDIDDDEFFMQGTPTSSNP-SVAGSDVDNDELLDYDL 195


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 647 DEKVIEEAINSALTDAKRKGIRGKEVTPYI 558
           D KVI + IN      K KG  GK V+P +
Sbjct: 256 DHKVITKCINKHRKVIKTKGANGKRVSPQV 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,187,439
Number of Sequences: 27780
Number of extensions: 355505
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)