Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m22
(377 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 159 2e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 154 5e-39
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.32
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 0.56
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.0
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.0
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 3.9
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 24 9.1
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 24 9.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 24 9.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 9.1
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 24 9.1
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.1
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 24 9.1
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 159 bits (385), Expect = 2e-40
Identities = 72/106 (67%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Frame = -2
Query: 334 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 155
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 154 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRD 20
+ +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+ + RD
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 154 bits (373), Expect = 5e-39
Identities = 70/109 (64%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Frame = -2
Query: 334 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 155
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 154 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR 11
+ +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+ + RD R
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKR 109
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.32
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 253 RCVPKDKAIKKFVIRNIVEAAAVRDI 176
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 0.56
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 194 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 313
+ +DV + +L + + L P+A+C +S ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 269 SHSFNVTTSMLGASSITAL---TSHVSNLRSGEQ 361
+ FN+ TS +SS+T+ +SH+SN + ++
Sbjct: 97 ARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 87 LSGTDRRKTEESVLLPRVTSLGT 19
++ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 115 CVSCAIHSKVVRNRSKKDRRIRTPPKS 35
C SC+ K N+ + RR++ PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 188 RRRFYDVPNHELFDSLVLWHAPRA 259
R F +V N L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 23.8 bits (49), Expect = 9.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 247 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 68
+PKDKA++ RN + A I DA KL A+L V SK + SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216
Query: 67 K-DRRIRTPPK 38
K + ++ T P+
Sbjct: 217 KEEHKLNTKPQ 227
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 55 IRTPPKSNFPRDMSR 11
IRTP KS FP+D ++
Sbjct: 157 IRTPKKSYFPKDHAK 171
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 259 CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 164
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 9.1
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = -1
Query: 119 LLRVMRHPQQSCQEQIEERQKNPYSSQ 39
+ ++ HP++ Q+Q+E+ Q+ +S +
Sbjct: 421 IFNLLFHPEEVQQQQLEQMQQQQFSPE 447
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 340 RNMTRKRRNGGRAKHG 293
R R RR GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 23.8 bits (49), Expect = 9.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 259 SLCISQL*RDHVHAWRVLHYGAYESCF*PPIR 354
S C+ ++ +H+ A ++HYG +C P R
Sbjct: 91 SCCVDEVAAEHMSADAIVHYG--RACLSPTSR 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,913
Number of Sequences: 5004
Number of extensions: 23803
Number of successful extensions: 60
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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