Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m21
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.61 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   4.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   7.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   7.6  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 652 SLRENVNNQLHARDASQLHLLDWENFMGEFSSY 554
           +L E    QLH+RD  ++ L   +N +GEF  Y
Sbjct: 252 ALYEKDREQLHSRDWKKIQLAKTQNDLGEFLDY 284


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 646 RENVNNQLHARDASQLHLLDWENFMGEFSSYFGLHAH-NV*HLQYLTADLFVKQAFLFQ* 470
           R+     L   +  +  L+   NF+  FSS+F L +H  +   Q L  D  +   FLF  
Sbjct: 270 RKEFQRWLRLYEFRRFGLIGLSNFVNSFSSFFELISHFLIKSAQNLKGDSLLD--FLFDY 327

Query: 469 LETVVSTIMKKVALGKII 416
             +  +TI   +AL  +I
Sbjct: 328 ARSCQNTISYPIALQCLI 345


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 724 RNPNKYKRYSELIARQSEAGGASASLRENVNNQLHARDASQL-HLL-DWENFMG 569
           RNP+  K+Y E  +    A GA  +L++   N L  R + +L H++ D +N  G
Sbjct: 213 RNPDSRKQYEETTSASLSAPGAFDALKQ--TNALERRASKRLSHMVKDQQNNEG 264


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 727 VRNPNKYKRYSELIARQSEAGGASASL 647
           V NP K KR  EL  + SE+G   ++L
Sbjct: 324 VNNPKKRKRALELALKGSESGSPDSTL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,210
Number of Sequences: 5004
Number of extensions: 63851
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)