Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m21
         (833 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-557|AAF51147.1|  993|Drosophila melanogaster CG9660-PB,...    32   1.1  
Y00274-1|CAA68377.1|  758|Drosophila melanogaster finger protein...    31   1.5  
U17742-1|AAB60232.1|  758|Drosophila melanogaster zinc finger DN...    31   1.5  
BT024234-1|ABC86296.1|  758|Drosophila melanogaster LD14196p pro...    31   1.5  
AE014297-790|AAF54270.1|  758|Drosophila melanogaster CG9786-PB,...    31   1.5  
AE014297-789|AAN13395.1|  758|Drosophila melanogaster CG9786-PA,...    31   1.5  
AY075522-1|AAL68330.1|  148|Drosophila melanogaster RE70209p pro...    29   5.9  
AE014298-2932|AAN09518.1|  148|Drosophila melanogaster CG33932-P...    29   5.9  
AE013599-113|AAF57305.2|  399|Drosophila melanogaster CG12754-PA...    29   5.9  

>AE014134-557|AAF51147.1|  993|Drosophila melanogaster CG9660-PB,
           isoform B protein.
          Length = 993

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 310 KTFEANKVGQHTTYDVVGKRDYNKFDKLVKKY*HVAINHTTFQEYKQSQQKAFRSLCS 137
           ++  A+K    +TY +    D+ +F +++K + +V +    FQ+Y  SQ   +  + S
Sbjct: 15  QSLNAHKDASTSTYPLPSVADWKEFQQMLKNHKNVQVKRYGFQDYHHSQDFKYGKIYS 72


>Y00274-1|CAA68377.1|  758|Drosophila melanogaster finger protein
           protein.
          Length = 758

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 141 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 37
           ++ CPKC FVT  +  +  +I  HKN      D+C
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC 302


>U17742-1|AAB60232.1|  758|Drosophila melanogaster zinc finger
           DNA-binding protein protein.
          Length = 758

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 141 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 37
           ++ CPKC FVT  +  +  +I  HKN      D+C
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC 302


>BT024234-1|ABC86296.1|  758|Drosophila melanogaster LD14196p
           protein.
          Length = 758

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 141 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 37
           ++ CPKC FVT  +  +  +I  HKN      D+C
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC 302


>AE014297-790|AAF54270.1|  758|Drosophila melanogaster CG9786-PB,
           isoform B protein.
          Length = 758

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 141 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 37
           ++ CPKC FVT  +  +  +I  HKN      D+C
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC 302


>AE014297-789|AAN13395.1|  758|Drosophila melanogaster CG9786-PA,
           isoform A protein.
          Length = 758

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 141 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 37
           ++ CPKC FVT  +  +  +I  HKN      D+C
Sbjct: 268 ILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCDKC 302


>AY075522-1|AAL68330.1|  148|Drosophila melanogaster RE70209p
           protein.
          Length = 148

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +1

Query: 52  FCVKIFMHFYVFSHAHFGRRHKITLWT*HYIMIGRLFAEIVCTLETSYD*SQHVNIFSPI 231
           FCV + +  Y+ S+      H+  +W+ +++++  +F  ++C   +S    ++  +FSPI
Sbjct: 72  FCVIVGIRMYLDSNNKRKALHRF-MWSTYFLVLIAIFKYLLCLKLSSKTGLEYSEVFSPI 130


>AE014298-2932|AAN09518.1|  148|Drosophila melanogaster CG33932-PA,
           isoform A protein.
          Length = 148

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 14/60 (23%), Positives = 33/60 (55%)
 Frame = +1

Query: 52  FCVKIFMHFYVFSHAHFGRRHKITLWT*HYIMIGRLFAEIVCTLETSYD*SQHVNIFSPI 231
           FCV + +  Y+ S+      H+  +W+ +++++  +F  ++C   +S    ++  +FSPI
Sbjct: 72  FCVIVGIRMYLDSNNKRKALHRF-MWSTYFLVLIAIFKYLLCLKLSSKTGLEYSEVFSPI 130


>AE013599-113|AAF57305.2|  399|Drosophila melanogaster CG12754-PA
           protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 219 NIDMLRSIIRRFKSTNNLSKKPSDHYVVLC 130
           ++DMLR  IRR +S  NLS+  S   +V C
Sbjct: 218 HLDMLRERIRRLRSDENLSEAESYEELVKC 247


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,633,414
Number of Sequences: 53049
Number of extensions: 691594
Number of successful extensions: 1675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)