Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m21
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.      30   1.8  
Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical
           protein F43G9.11 protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -3

Query: 216 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 40
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 39  CPN 31
           CP+
Sbjct: 167 CPH 169


>AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -3

Query: 216 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 40
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 39  CPN 31
           CP+
Sbjct: 167 CPH 169


>Z49128-2|CAA88959.1|  848|Caenorhabditis elegans Hypothetical
           protein M03C11.2 protein.
          Length = 848

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 716 QQVQTIQRINCAPIRSRRRICEFTRKRKQPA 624
           +Q+Q+ +R+     ++RR + E +RKRK PA
Sbjct: 106 EQIQSRERLQSRIDQARRGMVEVSRKRKAPA 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,702
Number of Sequences: 27780
Number of extensions: 374931
Number of successful extensions: 957
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)