Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m21
(833 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 26 0.49
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 25 1.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 24 2.0
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 24 2.0
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 24 2.0
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 24 2.0
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 3.5
DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein. 23 4.6
DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein. 23 4.6
AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced prot... 23 4.6
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 25.8 bits (54), Expect = 0.49
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 752 KGFSLRKVG*KPQQVQTIQRINCAPIRSRRRICEFTRKRKQPATCSRRVSITF 594
KGF R + K Q + C+ +R R C++ R +K A R ++ F
Sbjct: 88 KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAVGMSRDAVRF 140
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 24.6 bits (51), Expect = 1.1
Identities = 16/73 (21%), Positives = 31/73 (42%)
Frame = -2
Query: 799 GIPPGHVMCPPREITKKVFHYAKWVRNPNKYKRYSELIARQSEAGGASASLRENVNNQLH 620
G P + PPRE ++ K R+ +YKR ++ +E +N+ +
Sbjct: 129 GPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENY 188
Query: 619 ARDASQLHLLDWE 581
+ + H +DW+
Sbjct: 189 NWEHKETH-IDWQ 200
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 224 EKILTCCDQSY-DVSRVQTISAKSL 153
EK TCCD+ Y D++ T+ K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 224 EKILTCCDQSY-DVSRVQTISAKSL 153
EK TCCD+ Y D++ T+ K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 224 EKILTCCDQSY-DVSRVQTISAKSL 153
EK TCCD+ Y D++ T+ K+L
Sbjct: 217 EKFYTCCDEPYLDITFNITMRRKTL 241
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 86 NSLSNNYNYNNNYNNYNKHNYNKL 109
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 319 NSLSNNYNYNNNYNNYNKHNYNKL 342
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 464 DSCIHNYEKSSAWKNYRKHNRKQI 393
+S +NY ++ + NY KHN ++
Sbjct: 319 NSLSNNYNYNNNYNNYNKHNYNKL 342
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 3.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 452 HNYEKSSAWKNYRKHNRKQI 393
+NY ++ + NY KHN ++
Sbjct: 90 NNYNYNNNYNNYNKHNYNKL 109
>DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein.
Length = 135
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 712 KYKRYSELIARQSEAGGASASLRENVNNQL 623
K +RY+E I +Q S + +EN+ +L
Sbjct: 58 KPQRYNECILKQFNIVDESGNFKENIVQEL 87
>DQ435336-1|ABD92651.1| 135|Apis mellifera OBP19 protein.
Length = 135
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 712 KYKRYSELIARQSEAGGASASLRENVNNQL 623
K +RY+E I +Q S + +EN+ +L
Sbjct: 58 KPQRYNECILKQFNIVDESGNFKENIVQEL 87
>AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced protein
75 protein.
Length = 87
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 752 KGFSLRKVG*KPQQVQTIQRINCAPIRSRRRICEFTRKRK 633
+GF R + K Q + C+ +R R C++ R +K
Sbjct: 39 QGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRLKK 78
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,832
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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