Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m20
(788 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 28 0.086
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 2.4
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 23 3.2
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 23 4.3
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 7.5
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 22 7.5
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 22 7.5
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 22 7.5
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 22 7.5
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 9.9
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 28.3 bits (60), Expect = 0.086
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 381 NRNAKKTVDKEAQIFCHNTNMAVKYDN-NNLQMLDK 277
N++ +K + +E FC N +KYD+ ++ LDK
Sbjct: 323 NQDVQKKLREEINTFCPKNNKELKYDDIKEMEYLDK 358
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Frame = -3
Query: 429 NWKSYVQYENDCKINKNRNAKKTVDKEAQIFC-------HNTNMAVKYDNNN 295
N + Y +Y K A++ +E +I HN N Y+NNN
Sbjct: 51 NEREYRKYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNN 102
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 342 IFCHNTNMAVKYDNNNLQMLDKDSCQVFLPS 250
I C N+ +Y NN++++ KD + PS
Sbjct: 330 IGCWNSEHFFEYGGNNIEIIVKDPETLQFPS 360
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 22.6 bits (46), Expect = 4.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -3
Query: 744 SNISLYLTCTPIMK*GRTDVIEATRQNEARSTVECARTKTRLNLSIIKDH 595
+N++ +LT G DV++ +EA + C T + L DH
Sbjct: 165 NNLTAFLTTLD----GVNDVVQHQSGSEAEAEFVCIATPEAIELHFTTDH 210
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Frame = -3
Query: 429 NWKSYVQYENDCKINKNRNAKKTVDKEAQIFC-------HNTNMAVKYDNNN 295
N + Y +Y K ++ +E +I HN N Y+NNN
Sbjct: 51 NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNN 102
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Frame = -3
Query: 429 NWKSYVQYENDCKINKNRNAKKTVDKEAQIFC-------HNTNMAVKYDNNN 295
N + Y +Y K ++ +E +I HN N Y+NNN
Sbjct: 52 NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNN 103
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Frame = -3
Query: 429 NWKSYVQYENDCKINKNRNAKKTVDKEAQIFC-------HNTNMAVKYDNNN 295
N + Y +Y K ++ +E +I HN N Y+NNN
Sbjct: 52 NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNN 103
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Frame = -3
Query: 429 NWKSYVQYENDCKINKNRNAKKTVDKEAQIFC-------HNTNMAVKYDNNN 295
N + Y +Y K ++ +E +I HN N Y+NNN
Sbjct: 52 NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNN 103
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Frame = -3
Query: 429 NWKSYVQYENDCKINKNRNAKKTVDKEAQIFC-------HNTNMAVKYDNNN 295
N + Y +Y K ++ +E +I HN N Y+NNN
Sbjct: 52 NEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNN 103
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 21.4 bits (43), Expect = 9.9
Identities = 9/39 (23%), Positives = 16/39 (41%)
Frame = -3
Query: 675 TRQNEARSTVECARTKTRLNLSIIKDHVRSIEQ*VRGTG 559
TR+ C + R+ + +I +H+ GTG
Sbjct: 93 TREQFIDMVARCNKAGVRIYVDVIMNHMSGDRNDAHGTG 131
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,487
Number of Sequences: 438
Number of extensions: 4490
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -