Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m19
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   7.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   7.4  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   9.8  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.8  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 623 KFLSRYLFKYLNLDSKSCKFLSSG 694
           KF+ RY++KY+++      F SSG
Sbjct: 33  KFVGRYIYKYISILIYLYSFFSSG 56


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 295 ISICFTSNVFTV--SGYL*SQNYYNSFLKNCIVYKQSYLRNKN 173
           + +C T    T+   G+   Q+  N+ L++C++  Q+YL N +
Sbjct: 12  LQVCSTHYAMTIVSCGFHSPQSLMNADLQHCLLADQNYLLNNS 54


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 804 HRWAYSTIPFGPSQNRESVIFINLRFSL 721
           + W +  +PF PS N  S  F  LRF++
Sbjct: 7   YTWTFRRLPFIPSTNSAS-FFSTLRFNM 33


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +2

Query: 590 NALVFKSNRMLKFLSRYLFKYLNLDSKSC-KFLSSGQM-------ITF*KLYNENLKLIK 745
           N ++F    + K L+R  F +L L   S  +F  S +M       + + K YNE  K I 
Sbjct: 6   NEVLFSRLVVCKNLTRKNFPFLQLKGSSILRFEWSEEMYRLYIWLLPYRKDYNEKFKGIL 65

Query: 746 ITDSLFWLG 772
           I  S+F LG
Sbjct: 66  INPSIFLLG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,403
Number of Sequences: 5004
Number of extensions: 57245
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)