Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m18
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      129   9e-31
08_02_1181 - 24985963-24986242,24987109-24987197                      126   8e-30
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    108   2e-24
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   5.2  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   6.9  
04_01_0359 + 4711289-4713052,4713423-4713950                           26   9.1  
01_03_0147 - 13125065-13126679,13126802-13127664                       26   9.1  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  129 bits (311), Expect = 9e-31
 Identities = 63/111 (56%), Positives = 80/111 (72%), Gaps = 2/111 (1%)
 Frame = -1

Query: 333 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 154
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 153 LNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKG 7
           LNK +WS G+R+VP          RND+ED+  +L++LVT   VP   +KG
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKG 114


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  126 bits (303), Expect = 8e-30
 Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
 Frame = -1

Query: 327 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 151
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 150 NKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKG 7
           NK +WS G+R+VP          RND+ED+  +L++LVT   VP   +KG
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKG 112


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  108 bits (259), Expect = 2e-24
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 18/117 (15%)
 Frame = -1

Query: 303 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 172
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 171 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKG 7
           IR+D +LNK +W+ G+R+VP          RND+ED+  +L++LVT   +P   +KG
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKG 129


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 276 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 172
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 363 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 268
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 115 NISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSW 228
           NI    R  +F+ A  Y ++    L+F+  SD F   W
Sbjct: 48  NILQCQRVSDFLIAMAYFSIPLELLYFATCSDLFPLKW 85


>01_03_0147 - 13125065-13126679,13126802-13127664
          Length = 825

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 116 TFLTPLDQRNLFKRVSTRMSGVPICFS 196
           ++LT L  RNL + +  R +G P C++
Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,434,153
Number of Sequences: 37544
Number of extensions: 169360
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)