Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m16
(831 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY578799-1|AAT07304.1| 679|Anopheles gambiae brinker protein. 25 2.1
AY578810-1|AAT07315.1| 897|Anopheles gambiae smurf protein. 25 3.7
AY994089-1|AAX86002.1| 267|Anopheles gambiae hyp37.7-like precu... 24 4.9
AY534996-1|AAT07394.1| 471|Anopheles gambiae XK-related b protein. 24 4.9
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 24 4.9
AY017417-1|AAG54081.1| 383|Anopheles gambiae arrestin protein. 24 6.5
AJ304409-1|CAC39103.2| 383|Anopheles gambiae arrestin protein. 24 6.5
AY341194-1|AAR13758.1| 294|Anopheles gambiae laminin protein. 23 8.6
AY341193-1|AAR13757.1| 294|Anopheles gambiae laminin protein. 23 8.6
AY341192-1|AAR13756.1| 294|Anopheles gambiae laminin protein. 23 8.6
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr... 23 8.6
>AY578799-1|AAT07304.1| 679|Anopheles gambiae brinker protein.
Length = 679
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 549 LPVHSTCGITSSSSHACNSTA*GSL 623
+PV S ++++SS +C+S+A GSL
Sbjct: 233 IPVSSCSPLSTASSASCSSSAAGSL 257
>AY578810-1|AAT07315.1| 897|Anopheles gambiae smurf protein.
Length = 897
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = -1
Query: 768 NTKRRTASRG---LYHIPRLQTTW 706
N + RT +G YHIP Q+TW
Sbjct: 331 NAEIRTTQQGQVYFYHIPTKQSTW 354
>AY994089-1|AAX86002.1| 267|Anopheles gambiae hyp37.7-like
precursor protein.
Length = 267
Score = 24.2 bits (50), Expect = 4.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 401 QSGVGGHQRIGKMYNFFVGLG 463
Q+ +G Q + ++YN+F G+G
Sbjct: 124 QNYIGHTQDVPRIYNYFAGVG 144
>AY534996-1|AAT07394.1| 471|Anopheles gambiae XK-related b protein.
Length = 471
Score = 24.2 bits (50), Expect = 4.9
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +2
Query: 89 VVLGFVLVSRQRFFNF------VKHVHGVGHIVAAKYHVGRTQAFNATVKT 223
VVLG+ L RQ+F F V + IV+ ++++ + + NA+ T
Sbjct: 95 VVLGYALYERQKFAYFAAVIVIVSFSLVISQIVSIRWYLNKRKIRNASAST 145
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 508 IEELNKKLAFASESLAEANE 449
IEELNKK+ +++ EA E
Sbjct: 743 IEELNKKIETLQKTIVEARE 762
>AY017417-1|AAG54081.1| 383|Anopheles gambiae arrestin protein.
Length = 383
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 238 RAQKRSLNRSIKRLGSSDVVFSSDYVPNA 152
+ Q + R +K+LGS+ + F+ + PNA
Sbjct: 95 KEQTKLQERLLKKLGSNAIPFTFNISPNA 123
>AJ304409-1|CAC39103.2| 383|Anopheles gambiae arrestin protein.
Length = 383
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 238 RAQKRSLNRSIKRLGSSDVVFSSDYVPNA 152
+ Q + R +K+LGS+ + F+ + PNA
Sbjct: 95 KEQTKLQERLLKKLGSNAIPFTFNISPNA 123
>AY341194-1|AAR13758.1| 294|Anopheles gambiae laminin protein.
Length = 294
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
+AN EA R LAN+M D AQ + N +L +L
Sbjct: 160 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 199
>AY341193-1|AAR13757.1| 294|Anopheles gambiae laminin protein.
Length = 294
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
+AN EA R LAN+M D AQ + N +L +L
Sbjct: 160 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 199
>AY341192-1|AAR13756.1| 294|Anopheles gambiae laminin protein.
Length = 294
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
+AN EA R LAN+M D AQ + N +L +L
Sbjct: 160 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 199
>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
precursor protein.
Length = 1623
Score = 23.4 bits (48), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
+AN EA R LAN+M D AQ + N +L +L
Sbjct: 1299 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 1338
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,601
Number of Sequences: 2352
Number of extensions: 17577
Number of successful extensions: 46
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -