Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m16
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical pr... 32 0.44
AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical ... 29 4.1
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 29 5.4
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 29 5.4
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 29 5.4
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 7.1
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 7.1
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 7.1
AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormo... 28 7.1
>U61954-5|AAK29812.1| 575|Caenorhabditis elegans Hypothetical
protein F41H10.4 protein.
Length = 575
Score = 32.3 bits (70), Expect = 0.44
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 6/176 (3%)
Frame = -3
Query: 520 NYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARR--ETAQLA 347
NY + EE+ KK A AS+ + + FA+ L+ + + + RR ET +
Sbjct: 27 NYELREEIKKKNAAASQHQNSPKNEALQFASKLINRASSSKKDEAEIESLRRKLETQEQE 86
Query: 346 NRM--ADIAQDV-IAKPNNPQLLHSLAVCALGG-EKYAFLRAQKRSLNRSIKRLGSSDVV 179
R+ + + +++ N L + ++ + EK A R L +IK L V+
Sbjct: 87 FRLQQSTLFEELKTISTQNETLKNQMSSYSDHPLEKEAEERQTVEQLKEAIKNLTDEKVL 146
Query: 178 FSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTERQI 11
+ +P N + + E L Q + LL + + I ++ + E +
Sbjct: 147 LCQETIPAISNKVTSLSEELENCQTLNVELEDRLLSITSESEAILKIKEKVVEENL 202
>AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.14 protein.
Length = 468
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = -1
Query: 288 YIRWPCVR*AEKSMRFCARKSAVLTVALNAWVRPTWYLAATMCPTP*TCLTKLKKRCLET 109
Y++ C+ A K + +KS VA+N T C P + +L C E
Sbjct: 241 YVQSVCLEIANKDKEY--QKSFTALVAINKKDEET------KCQEPVEKIFELT--CSEC 290
Query: 108 STKPSTTRSRCCKT*LE 58
TK + R RCCKT +E
Sbjct: 291 MTKQTVERFRCCKTCIE 307
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -3
Query: 421 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 242
+TA A M +A +E A M+ ++ + + NP + + CA+ GE +A
Sbjct: 7 ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64
Query: 241 LRAQKRSLNRSIKRL 197
+ + R I L
Sbjct: 65 VASDTRMTQNDINIL 79
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -3
Query: 421 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 242
+TA A M +A +E A M+ ++ + + NP + + CA+ GE +A
Sbjct: 7 ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64
Query: 241 LRAQKRSLNRSIKRL 197
+ + R I L
Sbjct: 65 VASDTRMTQNDINIL 79
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 467 TFASKRQLFI*LFNHTIICVHLDGRRVLARAQHLRNHLLQQPRL 598
TF + R FN+ ++C D R V A LR HL QQ L
Sbjct: 101 TFVAHRYKCHGSFNNNVMCPLGDCREVFASLYTLRRHLSQQHEL 144
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 589 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 413
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 412 ------NAGLVQANTMLNEARRETAQLANRMAD 332
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 589 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 413
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 412 ------NAGLVQANTMLNEARRETAQLANRMAD 332
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 589 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 413
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 412 ------NAGLVQANTMLNEARRETAQLANRMAD 332
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 266 protein.
Length = 920
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -3
Query: 163 VPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLT 62
+PN + K+ E+ P + Y+AK N +T ++++
Sbjct: 383 IPNPTRKVMKILESFPYDVYEAKRNMLTYAESIS 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,829,191
Number of Sequences: 27780
Number of extensions: 394025
Number of successful extensions: 1257
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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