Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m13
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       42   8e-04
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870     31   1.6  
03_02_0390 + 8056006-8057502                                           30   2.7  
07_03_0604 + 19903654-19904598                                         29   4.8  
01_06_1618 - 38681729-38683989,38685577-38685796                       29   4.8  
02_05_1030 + 33623372-33623975,33624098-33624105                       29   6.3  
03_05_0830 + 28034179-28035492                                         28   8.4  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
 Frame = -2

Query: 852 K*LWGVAMYGRGWTGVTKXYEWQLFSGTGNGPVS-GTWEDGVVDYRQIQ-------KDLN 697
           K + G+ +YGR W    K            GP   G+   G + Y ++Q       +   
Sbjct: 277 KVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAMSYAEVQWLAATATRGSR 336

Query: 696 NYVYTFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADNGDL 520
             +  +D+A+ ASYV   S GD+ ++FD V  V  K+ +  R  L G F W ++ D+ +L
Sbjct: 337 AVITAYDNASVASYV---SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDDANL 393


>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
          Length = 331

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -2

Query: 723 YRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNKLGGLFAWE 544
           YR +  DL  Y  +   AA+  Y      GDL++        GK  +V  +  G L AW 
Sbjct: 62  YRAVAPDLRGYGDSDAPAAELQYTAMHVVGDLVALLDAVVGAGKPVFVVAHDWGALTAWN 121

Query: 543 IDADNGDLLNAM 508
           +     D + A+
Sbjct: 122 LCLFRPDRVRAL 133


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 218 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 93
           L   DHP  P L   L  G+ +C   + C   D+  V   RP
Sbjct: 157 LSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHAVLRRRP 198


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 350 SHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYH-FTTDQFICNYLGITDHPMTPYLVPL 174
           S  +V+  TT  K RLLR   ++ ++ +    +  F T     NY  + DHP+ P +  L
Sbjct: 209 SDERVIVFTTNYKERLLRPGRMDMHVYMGYCGWEAFKT--LAHNYFLVDDHPLFPEIRQL 266

Query: 173 LSFGKASCA 147
           L+  +A+ A
Sbjct: 267 LAGVEATPA 275


>01_06_1618 - 38681729-38683989,38685577-38685796
          Length = 826

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/87 (22%), Positives = 37/87 (42%)
 Frame = -2

Query: 840 GVAMYGRGWTGVTKXYEWQLFSGTGNGPVSGTWEDGVVDYRQIQKDLNNYVYTFDSAAQA 661
           G + Y   W G ++ Y W   SG   G +  +  + +         L+ Y + +      
Sbjct: 217 GASQYVMSWNGSSRLY-WS--SGNWTGGMFSSVPEMMASNAD---PLSLYTFNYVDGENE 270

Query: 660 SYVFDKSKGDLISFDSVDSVLGKVKYV 580
           SY F   KG+++    V  V G++K++
Sbjct: 271 SYFFYDVKGEVVLTRFVVDVTGQIKFM 297


>02_05_1030 + 33623372-33623975,33624098-33624105
          Length = 203

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 729 QHRPPTCPTPARCQCRKIV 785
           QHR P  P+P +  CRKIV
Sbjct: 87  QHRSPPSPSPRKMICRKIV 105


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
 Frame = -2

Query: 681 FDSAAQASY--VFDKSKGDLISFDSV----DSVLGKVKYVDRNKLGGLFAWEIDADNGDL 520
           FD   QA    V D S G    F+        +L  VK++   KL G +  EI  D G  
Sbjct: 243 FDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTGKY 302

Query: 519 LNAMNAQFKLRDEL*KQVSFVCSCY*DVERYKARTSKTHTFTIRNYRHDSAVFGSDF 349
           +  ++   K   E+    + +     DV RY  + S T    I++   +     S+F
Sbjct: 303 VFGVDDTLKTL-EMGAVETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQSNF 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,335,579
Number of Sequences: 37544
Number of extensions: 493210
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)