Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m12
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.2  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   9.9  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   DIVQVNNRISRVRTFLLFTAKCSRV 80
           +IV++NNR+  V  F L    CS+V
Sbjct: 394 NIVEINNRLDLVEKFKLLPELCSKV 418


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 392 QIYRYDIESRPRRFRGSGRTAP*DTVRFIATKYTGELVASTPDATLMYKRLATRSR 559
           Q+ R    S PR  RG+    P   + F+    T +  AS PD  L  K+ A  +R
Sbjct: 145 QLSRLAGHSEPRTHRGTHPDYPFKPLAFVLVDQTEKFAASHPD-RLQIKKNARVTR 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,437
Number of Sequences: 5004
Number of extensions: 70948
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)