Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m12
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-768|AAF54254.1|  337|Drosophila melanogaster CG7994-PA ...    33   0.36 
AM412940-1|CAL85563.1|  351|Drosophila melanogaster CG2217 prote...    29   7.8  

>AE014297-768|AAF54254.1|  337|Drosophila melanogaster CG7994-PA
           protein.
          Length = 337

 Score = 33.5 bits (73), Expect = 0.36
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 139 CKRKENGQVVYCHRYIKLFKKAS-LVYSGVCCGRPGTRPPT 258
           C +KE+ Q+  C  YIK  K  S    S  CC   GTRPPT
Sbjct: 262 CSKKEDQQMAAC--YIKCEKYCSGSDRSSCCCSCTGTRPPT 300


>AM412940-1|CAL85563.1|  351|Drosophila melanogaster CG2217 protein
           protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +1

Query: 154 NGQVVYCHRYIKLFKKASLVYSGVCCGRPGTRPPTLQLTIT*LARVSTPGPRLQLIYN 327
           NG + Y    +KL  K SL    V  GR  T P    L  T ++R   P P+  +I N
Sbjct: 239 NGTISYRFGRVKLCLKNSLDRKSVLNGRKETSPYRKSLDKTAVSREIVPAPQEPVITN 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,349,328
Number of Sequences: 53049
Number of extensions: 782204
Number of successful extensions: 2193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2193
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)