Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m12
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY669392-1|AAU05397.1|  158|Caenorhabditis elegans truncated aro...    29   5.4  
AY669391-1|AAU05396.1|  158|Caenorhabditis elegans truncated aro...    29   5.4  
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z83221-4|CAB05704.1|  298|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AY669392-1|AAU05397.1|  158|Caenorhabditis elegans truncated
           aromatic L-amino aciddecarboxylase protein.
          Length = 158

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 739 FNPTARFVNIFFFRYFTFKLVYSNVHALSLSHVGLSSV 626
           FNP   + +  FF YF   L Y ++ A  LS  GLSSV
Sbjct: 65  FNPATHWNHPHFFAYFPAGLAYHSIMADILSS-GLSSV 101


>AY669391-1|AAU05396.1|  158|Caenorhabditis elegans truncated
           aromatic L-amino aciddecarboxylase protein.
          Length = 158

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 739 FNPTARFVNIFFFRYFTFKLVYSNVHALSLSHVGLSSV 626
           FNP   + +  FF YF   L Y ++ A  LS  GLSSV
Sbjct: 65  FNPATHWNHPHFFAYFPAGLAYHSIMADILSS-GLSSV 101


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 538 FVHQSGVWSRSH*FPCIFRCNKPDRISRRGPSRPPEAP 425
           + H +GVWS    F  I      ++I RRG    PE P
Sbjct: 436 YAHPTGVWSSVDAFHSIGEPENFNQIVRRGKYAEPEVP 473


>Z83221-4|CAB05704.1|  298|Caenorhabditis elegans Hypothetical
           protein C49A1.6 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 466 GPVYCNEIYRGI-SGFD--SRRHFDVQKTSDPVS 558
           G  YC E+Y G+ SGFD  + + F V+ T   V+
Sbjct: 181 GTRYCREVYNGVLSGFDNNTEKEFVVKSTKGTVA 214


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 40  YEHFYCLLRNVRACR*LAVSARDAASSCPCLTLCK 144
           +E    L R V ACR   + ARD   S P  T CK
Sbjct: 592 FEALIDLSRKVPACREFDIFARDNDGSTPLHTACK 626


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 40  YEHFYCLLRNVRACR*LAVSARDAASSCPCLTLCK 144
           +E    L R V ACR   + ARD   S P  T CK
Sbjct: 592 FEALIDLSRKVPACREFDIFARDNDGSTPLHTACK 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,614
Number of Sequences: 27780
Number of extensions: 406073
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)