Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10m08
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 385 e-107
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 384 e-107
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 380 e-106
04_04_0040 + 22322839-22324173 33 0.27
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 1.1
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 1.1
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 31 1.4
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 2.5
12_02_0735 - 22636835-22639502,22639755-22640734 29 3.3
11_06_0087 - 19919224-19922304 29 3.3
04_03_1015 - 21734381-21736534 29 3.3
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 4.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.4
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 5.8
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 5.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.8
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 7.7
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 7.7
02_05_0202 + 26708049-26709074 28 7.7
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.7
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 385 bits (948), Expect = e-107
Identities = 172/258 (66%), Positives = 212/258 (82%)
Frame = -2
Query: 784 MARGXKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 605
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 604 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 425
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 424 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 245
+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 244 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 65
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPK 240
Query: 64 GKGIRLTIAEERDKRIAA 11
GKGI+L+I EE+ KR AA
Sbjct: 241 GKGIKLSIIEEQRKRDAA 258
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 384 bits (945), Expect = e-107
Identities = 171/258 (66%), Positives = 212/258 (82%)
Frame = -2
Query: 784 MARGXKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 605
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 604 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 425
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 424 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 245
+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 244 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 65
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPK 240
Query: 64 GKGIRLTIAEERDKRIAA 11
GKGI+L+I EE+ KR AA
Sbjct: 241 GKGIKLSIIEEQRKRDAA 258
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 380 bits (936), Expect = e-106
Identities = 172/256 (67%), Positives = 208/256 (81%)
Frame = -2
Query: 781 ARGXKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 602
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 601 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 422
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 421 KLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLC 242
KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Query: 241 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 62
M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK K ++SLP+G
Sbjct: 198 MVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKG 257
Query: 61 KGIRLTIAEERDKRIA 14
KGI+L+I EE KR A
Sbjct: 258 KGIKLSIIEEARKRNA 273
>04_04_0040 + 22322839-22324173
Length = 444
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 185 TSRL--LR-HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 27
TSRL LR H H HG + RH++ +R R H L A G P + AG
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVPMTSSKAAG 80
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 640 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 741
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 194 PRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG--HPPHHRRGAGQA 21
P +RL RH G HG R + E + GH H G P HH RG GQA
Sbjct: 15 PEAHARLPRHAPPAGGHGRGGRGQ-EGPIAIAAGHGRGHRGGGHGGPASPRHHLRGRGQA 73
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = -1
Query: 203 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 24
H R + H H G H H +H E +L +++ GH P+ R A Q
Sbjct: 313 HMYVRPSPNQDEHHGHTGHHIRHFLQLGWDYLHLTYKQEAANLGSSQNGHFPYRWRRASQ 372
Query: 23 AHRSQV 6
H + +
Sbjct: 373 YHEAGI 378
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 105 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 227
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 93 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 188
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 390 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 277
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -3
Query: 426 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 301
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 93 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 188
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 627 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 755
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 668 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLXASR 781
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -1
Query: 743 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 579
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 207 APSCPARDI--PAPSTLCTSRTPRDTPSP 127
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 126 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 257
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 71 AARQGHPPHHRRGAG 27
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>02_05_0202 + 26708049-26709074
Length = 341
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 161 HNVEGAGMSLAGHDGAHTPQVTASRDHTQVPG 256
+ V +G +L GH +H A+ H Q PG
Sbjct: 268 YRVFASGQALGGHKKSHVCSAAAAAAHAQTPG 299
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 490 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 386
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,433,385
Number of Sequences: 37544
Number of extensions: 615960
Number of successful extensions: 2168
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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