Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m06
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    31   0.28 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   1.5  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   2.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   4.6  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   6.1  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   6.1  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    26   6.1  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   8.1  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 514 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGL-VQANTMLNEARR 365
           G++    KK+        E+ EK+ H  + ++ A AGL   AN ++N ARR
Sbjct: 42  GIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARR 92


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 222  LRFCARRNAYFSPPNAHTANECSSWGLLGLAI 317
            LR C   N+ F  PN+HT N  S +  + L I
Sbjct: 906  LRICTIPNSIFDSPNSHTTNSNSFFTKVSLDI 937


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 664 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVL-CTGKYAPAVKMDTNYGVI 506
           L+ K+GV+ L+ K KLP++V  +  ++     + L    K+     +D+ Y V+
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVV 595


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -2

Query: 508 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNE----ARRETAQLANR 341
           IEE  K+  FAS S     E ++   +ALV+  A L   ++ + E    + R+   L  +
Sbjct: 173 IEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKK 232

Query: 340 MADIAQ 323
           +A +AQ
Sbjct: 233 LAGLAQ 238


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -2

Query: 340 MADIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRSIKRLGSSDV 182
           +AD  +  +A  + P  LH+L + A   E  +  RA    L+RS+  +  SD+
Sbjct: 449 LADKLRTQVALSDKPVNLHTLYIKASSSEMRSRKRAMDLQLSRSVVIIRISDL 501


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 214 RSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHN 89
           RS+ RL  +  + +   +PN  N L+ V+  +P+NQ K KH+
Sbjct: 292 RSVGRLVRAICILNHP-IPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -2

Query: 508 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 335
           IEE  KKL   +E L++ N  +      L T N  LV+    LN    E  QL  ++A
Sbjct: 90  IEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKT---LNSLNSEFLQLLRKIA 144


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 433 ANALVTANAGLVQANTMLNEARRETAQLA--NRMADIAQDVIAKPN 302
           A+A V + A  +  ++ +N  R + A  A  NRMAD+  + + K N
Sbjct: 304 ASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKAN 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,315
Number of Sequences: 5004
Number of extensions: 71857
Number of successful extensions: 259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)