Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m03
         (108 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          25   0.43 
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    21   5.2  
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    21   6.9  

>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 16  IL*QXESXTRAGDEIASFLRYCRMCG 93
           +L   E   R G  IA++L+Y ++CG
Sbjct: 145 VLQDREDKHRLGTAIAAYLQYQKICG 170


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 90  THPTVAKERSDFVACPRXAFXLLQNRV 10
           THPT+    +D V   R     L NR+
Sbjct: 379 THPTINTPETDPVPITRQEIINLANRL 405


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 82  DSSEGTKRFRRLPSXGF 32
           D S+GTK   RLP+  +
Sbjct: 79  DGSDGTKYVWRLPNQAY 95


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,997
Number of Sequences: 2352
Number of extensions: 1140
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 16
effective length of database: 526,347
effective search space used: 10000593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)