Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m03
         (108 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          18   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 25   QXESXTRAGDEIASFLRYCR 84
            Q  + TR GD + + + YC+
Sbjct: 1189 QVLAFTRVGDGVPTTVTYCQ 1208


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 25   QXESXTRAGDEIASFLRYCR 84
            Q  + TR GD + + + YC+
Sbjct: 1185 QVLAFTRVGDGVPTTVTYCQ 1204


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 100 QTFHTSDSSE 71
           +T HT DSS+
Sbjct: 334 ETLHTMDSSD 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,317
Number of Sequences: 438
Number of extensions: 184
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)