Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m02
         (852 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3720|ABC66189.2| 1519|Drosophila melanogaster CG34027-P...    29   6.1  
M18635-1|AAA28978.1|  264|Drosophila melanogaster protein ( D.me...    29   8.1  
AY071075-1|AAL48697.1|  264|Drosophila melanogaster RE14575p pro...    29   8.1  
AE014298-1437|AAF46573.1|  264|Drosophila melanogaster CG2227-PA...    29   8.1  

>AE014297-3720|ABC66189.2| 1519|Drosophila melanogaster CG34027-PA
            protein.
          Length = 1519

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 542  PITWNELEYIGGNDSNLIPNPGDSLCDNSLVYSIPVVIPYRSNQFVM 402
            P+T N L+     D  L  N  D        +SI V IP+R N FVM
Sbjct: 959  PVTMNALDNCPHKDKTLCLNIRDEKVPE---FSIKVKIPFRENAFVM 1002


>M18635-1|AAA28978.1|  264|Drosophila melanogaster protein (
           D.melanogaster transientreceptor potential (trp) locus
           gene C, complete cds. ).
          Length = 264

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 347 DLVFETLDDECRYAQMAKVVRSQLQKHKLDARIDHNDEKSCWRAH 213
           +L F+  DD+ R+   +     +L + +LDA ID   + +C + H
Sbjct: 62  NLAFDKSDDQLRFGSTSVPGSEKLFRSQLDATIDFARQVNCGKIH 106


>AY071075-1|AAL48697.1|  264|Drosophila melanogaster RE14575p
           protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 347 DLVFETLDDECRYAQMAKVVRSQLQKHKLDARIDHNDEKSCWRAH 213
           +L F+  DD+ R+   +     +L + +LDA ID   + +C + H
Sbjct: 62  NLAFDKSDDQLRFGSTSVPGSEKLFRSQLDATIDFARQVNCGKIH 106


>AE014298-1437|AAF46573.1|  264|Drosophila melanogaster CG2227-PA
           protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 347 DLVFETLDDECRYAQMAKVVRSQLQKHKLDARIDHNDEKSCWRAH 213
           +L F+  DD+ R+   +     +L + +LDA ID   + +C + H
Sbjct: 62  NLAFDKSDDQLRFGSTSVPGSEKLFRSQLDATIDFARQVNCGKIH 106


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,548,994
Number of Sequences: 53049
Number of extensions: 866936
Number of successful extensions: 1981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)