Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m02
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    32   0.60 
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    31   1.4  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    31   1.4  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        31   1.4  
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    29   5.5  
Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical p...    28   7.3  
AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical ...    28   9.7  

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 34/138 (24%), Positives = 53/138 (38%)
 Frame = -2

Query: 830 YMEYASVAGPNYDDFDLIKQRVVPHTLCGAGSNDRNSVFGDKSGMDEPLNNWKPDTLYLN 651
           Y+   ++A P Y    L +Q    +     G N   S +G + G ++P     P T    
Sbjct: 411 YIFVNTIANPGYHQISLKQQG--SYAFFVYGKNKLYS-YGYEGGANKPTVVLAPPTTPGP 467

Query: 650 LYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPITWNELEYIGGNDSNLIPNPGDS 471
            + PV  ++    PT +  P+      T +N    NP T           +N I +P  S
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTSKQTNTI-SPHLS 526

Query: 470 LCDNSLVYSIPVVIPYRS 417
               S+V S P + P  S
Sbjct: 527 TITGSIVTSTPTMAPQTS 544


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 323 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 418
           RL FQ P  RNY I +   LCAA  H +  DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 323 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 418
           RL FQ P  RNY I +   LCAA  H +  DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 323 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 418
           RL FQ P  RNY I +   LCAA  H +  DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 32  IADYEFEDMFEIVRIDCKDXXXXXAKYNM*LKFCF 136
           +AD+EF+D  +I+    K      AKYN  L F F
Sbjct: 253 VADFEFDDYNDILLNSVKPCNNTKAKYNFSLNFDF 287


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +3

Query: 45  NLKTCLKLFVLIVKICY------YFLLNIICN*NFVFILL 146
           N++TC+ L +L++ +CY      + + N + N NF FI +
Sbjct: 242 NIQTCIPLAILLIPLCYLVISRVFLIYNQVAN-NFCFITI 280


>Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 329 LDDECRYAQMAKVVRSQLQKHKLDARID 246
           L +EC Y Q    VR +  K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543


>Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 329 LDDECRYAQMAKVVRSQLQKHKLDARID 246
           L +EC Y Q    VR +  K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543


>AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical
           protein T22E7.2 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 614 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 739
           K+EH   KP + +     + +S   +   R Y +T++C R N
Sbjct: 16  KSEHFVRKPYESEAGRHVITNSFCSICEVRTYRETKHCKRCN 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,305,900
Number of Sequences: 27780
Number of extensions: 466114
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)