Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10m01
         (914 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001962-1|AAH01962.1|  496|Homo sapiens exonuclease 3'-5' domai...    34   0.63 
AK001600-1|BAA91781.1|  496|Homo sapiens protein ( Homo sapiens ...    34   0.63 

>BC001962-1|AAH01962.1|  496|Homo sapiens exonuclease 3'-5'
           domain-like 2 protein.
          Length = 496

 Score = 34.3 bits (75), Expect = 0.63
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = -1

Query: 314 PRTFQTIHTDGLIIKVLILCDECCKKELRDY---IKGENSFN-VAFKNCESILCRRISFQ 147
           PRT   I  DG I+KV + C E   K L+DY   ++G      +A +   ++LC  +S +
Sbjct: 24  PRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLK 83

Query: 146 XGADDLRRF 120
             A+ +  F
Sbjct: 84  SLAETVLNF 92


>AK001600-1|BAA91781.1|  496|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10738 fis, clone NT2RP3001427, weakly similar to
           WERNER SYNDROME HELICASE HOMOLOG. ).
          Length = 496

 Score = 34.3 bits (75), Expect = 0.63
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = -1

Query: 314 PRTFQTIHTDGLIIKVLILCDECCKKELRDY---IKGENSFN-VAFKNCESILCRRISFQ 147
           PRT   I  DG I+KV + C E   K L+DY   ++G      +A +   ++LC  +S +
Sbjct: 24  PRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLK 83

Query: 146 XGADDLRRF 120
             A+ +  F
Sbjct: 84  SLAETVLNF 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,538,563
Number of Sequences: 237096
Number of extensions: 1616738
Number of successful extensions: 2888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2888
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)