Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l18
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   0.60 
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   1.4  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    23   5.6  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    23   5.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    22   9.7  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    22   9.7  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    22   9.7  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    22   9.7  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 30  RILCFSPSGWPKCAVVFNGSL-NDFLPIASV-TNAATTNSRIISFMV 164
           R LCFS +  PK + VF G L  DF  I  +  N   T+ R+  F++
Sbjct: 222 RKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVI 268


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 PIASVTNAATTNSRIISFMVFYIRQY 182
           P+A+    AT +S ++ F+VFY   Y
Sbjct: 241 PLAAFCGLATISSYLVLFIVFYHNTY 266


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 80  KNYGTFWPSRGAETQDSKTL 21
           +N   F P+ GA+ +DSK+L
Sbjct: 322 ENLDEFKPADGADNEDSKSL 341


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 197 EKATHILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIK 78
           EK+ H +  IE+        C G     R G  ++ER I+
Sbjct: 818 EKSEHFIY-IENQFFVTSTTCEGTTIENRVGDALVERIIR 856


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 60  PKCAVVFNGSLNDF 101
           PKC V ++ SL+DF
Sbjct: 87  PKCIVKYHQSLDDF 100


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -1

Query: 188 THILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIKN 75
           T +L +IEH       +C        Y + +++  +KN
Sbjct: 794 TGLLESIEHSNLKEAVLCLALGADVNYQRAVVKALLKN 831


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 33  ILCFSPSGWPKCAVVF 80
           +LCF  + +PK A++F
Sbjct: 98  LLCFLCAAYPKYAIIF 113


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 166 NTMKLIILLFVVAAFVTLAMGRK 98
           NT+ L+I  F    FVT + G K
Sbjct: 464 NTILLLIATFARTIFVTFSYGAK 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 906,126
Number of Sequences: 5004
Number of extensions: 14961
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)