Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l18
(197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0161 + 1132505-1132704,1132839-1134075 31 0.17
01_06_0746 - 31636024-31641396 31 0.17
06_01_0221 + 1690978-1692171,1692265-1692276 29 0.69
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 27 1.6
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 27 2.8
07_01_1019 + 8714171-8714190,8714239-8714371,8714781-8714945,871... 26 3.7
08_02_0478 + 17621678-17623768 26 4.8
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308... 26 4.8
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 26 4.8
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 26 4.8
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 25 6.4
04_03_0860 + 20377577-20377948,20378440-20378505,20379411-203794... 25 6.4
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654... 25 6.4
07_03_0695 + 20753281-20753802 25 8.5
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 25 8.5
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 164 HHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSRGAETQDSKT 24
HH A C+G H RY + +I+ ++ Y + W + + S +
Sbjct: 366 HHARPNSACCQGHNHHGRYPEPVIKLVVRRYISAWQKPSSSSSSSSS 412
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 30.7 bits (66), Expect = 0.17
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -2
Query: 127 AFVTLAMGRKSLRDPLKTTAHFGHPE 50
+FVTL G++ L +PLK H+GHP+
Sbjct: 1240 SFVTL--GQRVLANPLKVRMHYGHPD 1263
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 28.7 bits (61), Expect = 0.69
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 173 NIEHHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSRGAETQDSKTLQQTRR 6
N+ H + D R +C YG K +E + G WPSRG + + T + R
Sbjct: 238 NMLHAQVD---AVRAAICRANYG-KAVEIRVSETG--WPSRGDDDEAGATPENAAR 287
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 30 RILCFSPSGWPKCAVVFNGSLNDFLPIASVTNAATT 137
R++ F+ +GW C + NG++++ + ++ ATT
Sbjct: 211 RVMSFTKNGWAVCVLSANGAVSNMTLRQAGSSGATT 246
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
+CL CCK+ + +S G L +LS+I CP
Sbjct: 433 VCLANCCKISDEAISHIAQGCK---NLRELSIISCP 465
>07_01_1019 +
8714171-8714190,8714239-8714371,8714781-8714945,
8715810-8715890,8716223-8716318
Length = 164
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 121 QTRPRQTAG*SASWCSIFDNIWVAF 195
Q R R TA + SWCS+ W+ +
Sbjct: 129 QMRNRLTAMNTRSWCSVLAGYWIDY 153
>08_02_0478 + 17621678-17623768
Length = 696
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 110 SECDKRGHDKQQDNQLHG-VLYSTIYG 187
S C + GHD Q +HG V+ S + G
Sbjct: 304 SSCSEHGHDDHQGRVIHGLVIKSALEG 330
>06_02_0006 +
10528423-10528768,10529132-10529201,10530820-10530892,
10530973-10531053,10532124-10532239,10532339-10532630
Length = 325
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 101 KIIERSIKNYGTFWPSRGAETQDSKTLQQTR 9
K + S + WP RGAE D L++T+
Sbjct: 157 KCEQTSTTGHSLAWPDRGAEKDDCLELRKTQ 187
>01_06_0359 +
28722524-28722613,28722794-28722863,28723062-28723159,
28724029-28724167,28724243-28724370,28724500-28724592,
28724707-28724757,28725405-28725470,28725568-28725633,
28725900-28725977,28726248-28726427,28726502-28726577,
28726660-28726823,28727569-28727931
Length = 553
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 42 FSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQYMGRFF 197
F P+GW + A+V S N TN+ +S ++ F+ +R +MG F
Sbjct: 395 FDPTGW-ELALVTTPSTN--------TNSMAMDSNLVGFLTLSLRIFMGGGF 437
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 30 RILCFSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQYMG 188
R+LC + + WP AVV+ G+ L A AA N I+ ++ Y + Y G
Sbjct: 362 RLLCAAVA-WPSPAVVYAGAALQSLTGAPRLLAAIANDDILP-VLNYFKAYEG 412
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 157 KLIILLFVVAAFVTLAMGRKSLRDPL 80
+L+I+LF++A + A+ R + +PL
Sbjct: 187 RLVIILFLLAVVASAAVARSNYEEPL 212
>04_03_0860 +
20377577-20377948,20378440-20378505,20379411-20379492,
20380142-20380362
Length = 246
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 188 THILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSI 81
T+IL E D P CR C T G K++E +
Sbjct: 78 TYILDAAEEAGVDLPYSCRAGACSTCAG-KVVEGGV 112
>03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,
6541815-6543215,6543268-6543357,6543800-6544515,
6545549-6545707,6545877-6546186,6546794-6546861,
6547354-6547896
Length = 1247
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 36 LCFSPSGWPKCAVVFNGSLNDFLPI 110
LC+SP AVV++GS D LP+
Sbjct: 1170 LCYSPD-----AVVYDGSFEDVLPV 1189
>07_03_0695 + 20753281-20753802
Length = 173
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 134 DKQQDNQLHGVLYSTIYGSLF 196
D++ NQ G+ Y TI+GS++
Sbjct: 49 DERNPNQKIGIHYGTIFGSVY 69
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 160 MKLIILLFVVAAFVTLAMGRKSLRDPLKTTAHFGHPEGLKHKIRRPY 20
M I+ + A L G K+ R+ +K HFG G+ H +PY
Sbjct: 139 MPEILTIDNFALLQVLLRGPKNAREAVK---HFGPAPGVPHSNTKPY 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,816,937
Number of Sequences: 37544
Number of extensions: 96514
Number of successful extensions: 228
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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