Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l18
(197 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY240161-1|AAO86898.1| 129|Homo sapiens anti-HAV capsid immunog... 28 4.8
BC000059-1|AAH00059.2| 771|Homo sapiens CELSR1 protein protein. 28 6.4
AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein. 28 6.4
AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven... 28 6.4
AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven... 28 6.4
AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven... 28 6.4
AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo ... 28 6.4
AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo ... 28 6.4
D87469-1|BAA13407.2| 2854|Homo sapiens KIAA0279 protein protein. 27 8.4
AL390252-1|CAI13170.1| 2923|Homo sapiens cadherin, EGF LAG seven... 27 8.4
AF234887-1|AAG00080.1| 2923|Homo sapiens FLAMINGO 1 protein. 27 8.4
AB065955-1|BAC06168.1| 2923|Homo sapiens seven transmembrane hel... 27 8.4
>AY240161-1|AAO86898.1| 129|Homo sapiens anti-HAV capsid
immunoglobulin G heavy chain variable region protein.
Length = 129
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 42 FSPSGWPKCAVVFNGSLNDF-LPIASVTNAATTNSRIISFMVFYIRQYMG 188
++PS + A+ + S N F L ++SVT A T F +Y+R Y G
Sbjct: 59 YNPSLKSRVAISVDTSKNQFSLKLSSVTAADTAVYYCARFSDYYVRDYYG 108
>BC000059-1|AAH00059.2| 771|Homo sapiens CELSR1 protein protein.
Length = 771
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P FL +++F P
Sbjct: 680 ICLREPCENYMKCVSVLRFDSSAP-FLSSTTVLFRP 714
>AY714129-1|AAU94938.1| 4186|Homo sapiens anchor protein protein.
Length = 4186
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
+CLR C+ + CVS R + P FL S +F P
Sbjct: 1448 VCLREPCENYMKCVSVLRFDSSAP-FLASASTLFRP 1482
>AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P FL +++F P
Sbjct: 1306 ICLREPCENYMKCVSVLRFDSSAP-FLSSTTVLFRP 1340
>AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P FL +++F P
Sbjct: 1306 ICLREPCENYMKCVSVLRFDSSAP-FLSSTTVLFRP 1340
>AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P FL +++F P
Sbjct: 1306 ICLREPCENYMKCVSVLRFDSSAP-FLSSTTVLFRP 1340
>AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo 2
protein.
Length = 3014
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P FL +++F P
Sbjct: 1306 ICLREPCENYMKCVSVLRFDSSAP-FLSSTTVLFRP 1340
>AF231023-1|AAF61929.1| 3312|Homo sapiens protocadherin Flamingo 1
protein.
Length = 3312
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
+CLR C+ + CVS R + P FL S +F P
Sbjct: 1378 VCLREPCENYMKCVSVLRFDSSAP-FLASASTLFRP 1412
>D87469-1|BAA13407.2| 2854|Homo sapiens KIAA0279 protein protein.
Length = 2854
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P F+ S++F P
Sbjct: 1162 ICLREPCENYMRCVSVLRFDSSAP-FIASSSVLFRP 1196
>AL390252-1|CAI13170.1| 2923|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 2 (flamingo homolog, Drosophila) protein.
Length = 2923
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P F+ S++F P
Sbjct: 1231 ICLREPCENYMRCVSVLRFDSSAP-FIASSSVLFRP 1265
>AF234887-1|AAG00080.1| 2923|Homo sapiens FLAMINGO 1 protein.
Length = 2923
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P F+ S++F P
Sbjct: 1231 ICLREPCENYMRCVSVLRFDSSAP-FIASSSVLFRP 1265
>AB065955-1|BAC06168.1| 2923|Homo sapiens seven transmembrane helix
receptor protein.
Length = 2923
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ICLRVCCKVFESCVSAPRDGQNVP*FLMDLSMIFCP 108
ICLR C+ + CVS R + P F+ S++F P
Sbjct: 1231 ICLREPCENYMRCVSVLRFDSSAP-FIASSSVLFRP 1265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,347,809
Number of Sequences: 237096
Number of extensions: 549103
Number of successful extensions: 906
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -