Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l18
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical...    26   4.2  
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical...    26   4.2  
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    26   4.2  
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct...    26   4.2  
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct...    26   4.2  
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    26   4.2  
U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine rece...    25   5.6  
Z82272-1|CAB05218.1|  341|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81086-7|CAB03118.2|  316|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    25   9.8  
U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid tran...    25   9.8  
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    25   9.8  

>Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical
           protein R102.8 protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 184 IYCRI*NTMKLIILLFVVAAFVTLAMG-RKSLRDP 83
           +Y  +  TM+++++LF+  A+VT   G  K+  DP
Sbjct: 39  LYIHVLLTMRILLILFITVAYVTAFPGFPKTKWDP 73


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 6   SSCLL*GLRILCFSPSGWPKCAVVFNGSLNDFLPIASVTNAATTNSRIISFMVFYIRQ 179
           S+ +L    ++C S     K + +FNGS ND+  +      +  + R I F    I+Q
Sbjct: 49  SNTILINFSVICMSEE---KISTMFNGSHNDYEVLREAIATSMNDFRSIWFTFSSIKQ 103


>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
            protein Y51A2D.19c protein.
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143  QDNQLHGVLYSTIYGSLF 196
            QDN   GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066


>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
            protein Y51A2D.19b protein.
          Length = 1118

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143  QDNQLHGVLYSTIYGSLF 196
            QDN   GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053


>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
            protein Y51A2D.19a protein.
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143  QDNQLHGVLYSTIYGSLF 196
            QDN   GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075


>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conductance
            calcium-activatedpotassium channel SLO-1c protein.
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143  QDNQLHGVLYSTIYGSLF 196
            QDN   GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066


>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conductance
            calcium-activatedpotassium channel SLO-1b protein.
          Length = 1118

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143  QDNQLHGVLYSTIYGSLF 196
            QDN   GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conductance
            calcium-activatedpotassium channel SLO-1a protein.
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 143  QDNQLHGVLYSTIYGSLF 196
            QDN   GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075


>U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine
           receptor, class sx protein14 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 166 NTMKLIILLFVVAAFVTLAM 107
           NT+K +ILLF++  F+T+ +
Sbjct: 216 NTLKYLILLFLMFRFITITI 235


>Z82272-1|CAB05218.1|  341|Caenorhabditis elegans Hypothetical
           protein F55G11.2 protein.
          Length = 341

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 131 GRVCHTRYGQKIIERSIKNYGTFWPSRGAETQDSKTLQQ 15
           G VC T  G+ I +  I     +WP+   ETQ +  L++
Sbjct: 19  GNVCKT--GKAINKPVIDGTPVYWPASWTETQPAPQLEK 55


>Z81086-7|CAB03118.2|  316|Caenorhabditis elegans Hypothetical
           protein F53B6.7 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 164 HHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTF 63
           H++ D P   RG++    YG+ ++   I+ +  F
Sbjct: 101 HYKFDPPLTERGQIVSETYGRGLLNAGIRPFEVF 134


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 116 TRYGQKIIERSIKNYGTFWPSRGAE 42
           T +G+ I   + +N+G +WP++G +
Sbjct: 581 TGWGKGIAIVNGRNFGRYWPTKGPQ 605


>U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid
           transporter protein 8 protein.
          Length = 483

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 33  ILCFSPSGWPKCAVVFNGSLNDFLPIASV 119
           I+CF+ SG   CA +F   L  FL + ++
Sbjct: 122 IVCFTSSGADNCAKLFGFGLLLFLTLTNM 150


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 13  VCCKVFESCVSAPRD 57
           +CC     CVSAPRD
Sbjct: 120 ICCMDTIGCVSAPRD 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,067,566
Number of Sequences: 27780
Number of extensions: 86349
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)