Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l14
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.5  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 576 VISESNVFNLVKITSL 623
           VI+ S +FNLVKI+ L
Sbjct: 296 VINFSGIFNLVKISPL 311


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 482 VEQHQLYFDQFSVEHHK 432
           ++QH LY  Q   +HH+
Sbjct: 92  MQQHSLYLQQQQQQHHQ 108


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 576 VISESNVFNLVKITSL 623
           VI+ S +FNLVKI+ L
Sbjct: 46  VINFSGIFNLVKISPL 61


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 705 VWLRFIW 725
           VWLRFIW
Sbjct: 77  VWLRFIW 83


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 143 KKAIAAEQTLRTTADVS 93
           KKAI A +TLR T  V+
Sbjct: 499 KKAIVAGETLRVTCPVA 515



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 120  NAAHHSRCFFFAEPRGECRFSRV 52
            NA+ HSR    + PR   R+SRV
Sbjct: 1768 NASAHSRSGSQSMPRQNGRYSRV 1790


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 229  QKKAAAMP*RYESAA*QNPQKSLKSCSSTRKLSLP 125
            +K  AAM  +       NP  S K  S+T +L++P
Sbjct: 1731 EKNEAAMKLKKRIEKGANPDLSQKPVSTTEELTVP 1765


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,482
Number of Sequences: 438
Number of extensions: 4017
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)