Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l13
         (1026 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0527 - 4177928-4178235,4178849-4181438                           32   0.85 
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    31   1.5  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   7.9  

>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 529 ALVTLASMADCSALLTHITGTSIPGRLFINRRFLAVNPNGTVYGGTIESDNADTTFKRLA 350
           +L  L S+        H++G SIP  +F     +A N N  +  GT   DNA T+ KR  
Sbjct: 560 SLAKLESLTQLVLSYNHLSG-SIP--IFRQHVDIATNGNPDLTNGTRNYDNAPTSGKRRT 616

Query: 349 VDRNRIVIQNAIT--CVYLCI 293
              N ++I  AIT   V LC+
Sbjct: 617 --HNTVIIVVAITGALVGLCL 635


>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 21   TIVSFFILGHDVYIGKLKRFNKVMAYTLNLPSLRPFEIC 137
            T   + +L  DVY   +  F K  A    +PS+ PFE+C
Sbjct: 1598 TAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFELC 1636


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 448 FINRRFLAVNPNGTVYGGTIESDN-ADTTFK--RLAVDRNR 335
           F  R  +    NGTVY GTI  DN A    K  RLA +R +
Sbjct: 406 FDERNVIGKGGNGTVYRGTIAKDNGAVVAIKRCRLATERQK 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,616,500
Number of Sequences: 37544
Number of extensions: 484613
Number of successful extensions: 1002
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3012716568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)