Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10l13
(1026 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 45 8e-05
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 45 8e-05
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 33 0.33
U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeas... 30 3.1
AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1 prot... 30 3.1
U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical p... 29 5.4
U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical p... 29 5.4
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 28 9.4
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 45.2 bits (102), Expect = 8e-05
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Frame = -3
Query: 397 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 224
GT E + + + ++V + + I+ T ++C+D G+LY S S +C E M
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162
Query: 223 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 59
+N YN Y Y + Y+ L+ G PR+ SK R+ + L RL P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 45.2 bits (102), Expect = 8e-05
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Frame = -3
Query: 397 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 224
GT E + + + ++V + + I+ T ++C+D G+LY S S +C E M
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162
Query: 223 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 59
+N YN Y Y + Y+ L+ G PR+ SK R+ + L RL P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 33.1 bits (72), Expect = 0.33
Identities = 24/83 (28%), Positives = 33/83 (39%)
Frame = -3
Query: 256 SDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLK 77
S C MR + Y K R+ + TP+ ++S + K L K
Sbjct: 98 SSKCVMRA---REQYKVQRKWQPRRPAAIPTTTVKTPKLKKLS----IKKVEAMRKALPK 150
Query: 76 RLSFPIYTSCPNIKNETIVQHRK 8
L FP T P I+NE +Q RK
Sbjct: 151 ELQFPTATEVPKIRNEVKIQARK 173
>U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeast
longevity geneprotein 1 protein.
Length = 368
Score = 29.9 bits (64), Expect = 3.1
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -3
Query: 850 LLHMIINVFMYDSFVFQN*TRFTSKILLVTQDRWMMSFICAKLMSFFAHDYKHNQIMTHL 671
++H +I +F+ S N R + ILL + D + KL+ + AH+ M L
Sbjct: 169 MVHHVITIFLLSSSWTINFVRVGTLILL-SHDVSDVFLEGGKLVRYDAHNKNMTNFMFVL 227
Query: 670 FFKTELALRVKFY 632
FF + +A R+ +Y
Sbjct: 228 FFSSWVATRLIYY 240
>AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1
protein.
Length = 368
Score = 29.9 bits (64), Expect = 3.1
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -3
Query: 850 LLHMIINVFMYDSFVFQN*TRFTSKILLVTQDRWMMSFICAKLMSFFAHDYKHNQIMTHL 671
++H +I +F+ S N R + ILL + D + KL+ + AH+ M L
Sbjct: 169 MVHHVITIFLLSSSWTINFVRVGTLILL-SHDVSDVFLEGGKLVRYDAHNKNMTNFMFVL 227
Query: 670 FFKTELALRVKFY 632
FF + +A R+ +Y
Sbjct: 228 FFSSWVATRLIYY 240
>U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical
protein F01F1.1c protein.
Length = 641
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 568 CYGELKFVMYRLLALVTLASMADCSALLTHIT 473
C + +FV YRLL + + + D +ALL +T
Sbjct: 502 CANQAEFVAYRLLYYIAMDNQIDINALLRELT 533
>U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical
protein F01F1.1a protein.
Length = 646
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 568 CYGELKFVMYRLLALVTLASMADCSALLTHIT 473
C + +FV YRLL + + + D +ALL +T
Sbjct: 507 CANQAEFVAYRLLYYIAMDNQIDINALLRELT 538
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 334 CDFCQRQGA*MWCRRCPIQWFRRKRFRLDLLPKTAG 441
C C R+G +WC CP F K D P+ G
Sbjct: 53 CCICARRGEVLWCHSCPAS-FHIKCLGYDTDPQPNG 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,995
Number of Sequences: 27780
Number of extensions: 465302
Number of successful extensions: 1030
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2709719642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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