Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10l13
         (1026 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = -3

Query: 274 YGSKTLSDDCFMR-EIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSV 98
           +GS     D  +  E   KNNY +    +  K+    L+ +G P  L +   +K+G    
Sbjct: 44  FGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVI-SKKVGDGGP 102

Query: 97  YAMTLLKRLSFPIYTSCPNIKNETIVQHRKC 5
             +      SF  Y  C  I + + +   KC
Sbjct: 103 -LLQPYPDWSFAKYDDCSGIVSASKLAIDKC 132


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = -3

Query: 274 YGSKTLSDDCFMR-EIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSV 98
           +GS     D  +  E   KNNY +    +  K+    L+ +G P  L +   +K+G    
Sbjct: 44  FGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVI-SKKVGDGGP 102

Query: 97  YAMTLLKRLSFPIYTSCPNIKNETIVQHRKC 5
             +      SF  Y  C  I + + +   KC
Sbjct: 103 -LLQPYPDWSFAKYDDCSGIVSASKLAIDKC 132


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = -3

Query: 274 YGSKTLSDDCFMR-EIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSV 98
           +GS     D  +  E   KNNY +    +  K+    L+ +G P  L +   +K+G    
Sbjct: 44  FGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLNVI-SKKVGDGGP 102

Query: 97  YAMTLLKRLSFPIYTSCPNIKNETIVQHRKC 5
             +      SF  Y  C  I + + +   KC
Sbjct: 103 -LLQPYPDWSFAKYDDCSGIVSASKLAIDKC 132


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 330 TMRFLSTARRLNVVSALSDSMVPP*TVPFGFTAKNRRLINSRPGIDV 470
           T R+LS   RLN+  ALS S+     V   F  +  +     PG+DV
Sbjct: 29  TTRYLSVCERLNL--ALSLSLTET-QVKIWFQNRRTKWKKQNPGLDV 72


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 223 KNNYNTYYKMYDRKLTYVALKNDGTPRKLQI 131
           KNN       ++ K     L+NDG P  L +
Sbjct: 63  KNNVPIDVDRWNGKTFVTILRNDGVPSSLNV 93


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 416 KRNRLRRNH*IGQRRHHIQAPCR*QKSHR 330
           K+  L+R+H +    HH+Q+    Q  HR
Sbjct: 134 KQETLQRHHHLQNHHHHLQSTAV-QDHHR 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,470
Number of Sequences: 438
Number of extensions: 5664
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)